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Mutant Information

Mutant Name	FN3859-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3859-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9631198 A-T Hetero INTERGENIC
SBS Chr1 22404469 G-A Hetero INTERGENIC
SBS Chr2 141015 C-T Hetero INTERGENIC
SBS Chr2 22647361 G-A Hetero INTERGENIC
SBS Chr3 6704762 A-C Hetero INTERGENIC
SBS Chr3 12161672 A-T Hetero INTERGENIC
SBS Chr3 14866139 C-A Hetero INTERGENIC
SBS Chr3 22477880 G-C Hetero INTERGENIC
SBS Chr3 27919083 C-T Homo UTR_3_PRIME
SBS Chr3 30388464 G-C Hetero UTR_5_PRIME
SBS Chr4 22470274 A-T Homo INTRON
SBS Chr4 28113727 G-A Hetero INTERGENIC
SBS Chr5 1018334 G-T Hetero UTR_3_PRIME
SBS Chr5 2535357 C-A Homo INTERGENIC
SBS Chr5 4523810 T-A Hetero INTRON
SBS Chr5 6624808 C-G Hetero INTERGENIC
SBS Chr5 18461399 T-C Homo INTERGENIC
SBS Chr6 334353 C-T Hetero INTERGENIC
SBS Chr6 7253946 C-A Hetero INTERGENIC
SBS Chr6 9629073 A-G Homo INTERGENIC
SBS Chr6 20726804 C-T Hetero INTERGENIC
SBS Chr6 23533520 T-A Hetero UTR_3_PRIME
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 5528007 T-C Homo INTRON
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 2672388 T-C Hetero INTERGENIC
SBS Chr8 9226653 G-A Homo INTERGENIC
SBS Chr8 17519787 A-G Homo INTERGENIC
SBS Chr8 23369870 G-A Hetero INTERGENIC
SBS Chr9 4847555 C-T Hetero INTERGENIC
SBS Chr9 10775415 A-T Hetero INTERGENIC
SBS Chr11 6559468 C-T Hetero INTERGENIC
SBS Chr11 15675007 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g126201
SBS Chr11 22704250 A-C Homo INTERGENIC
SBS Chr11 28341155 G-A Hetero INTERGENIC
SBS Chr12 4418622 A-T Hetero INTERGENIC
SBS Chr12 7996065 A-G Hetero INTERGENIC
SBS Chr12 15978166 A-T Hetero INTERGENIC
SBS Chr12 16149392 T-C Hetero INTERGENIC
SBS Chr12 16758877 T-C Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1089727 1089731 4
Deletion Chr9 13819060 13819072 12
Deletion Chr9 13847115 13847121 6
Deletion Chr8 17069631 17069635 4
Deletion Chr11 23639130 23639131 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5051313 5051317 3 OsKitaake01g066400
Insertion Chr2 12160477 12160482 4
Insertion Chr5 11530606 11530609 2
Insertion Chr5 12707812 12707815 2
Insertion Chr5 29525558 29525561 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1401456 1568366
Inversion Chr10 1401471 1568374

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9631198	A-T	Hetero	INTERGENIC
SBS	Chr1	22404469	G-A	Hetero	INTERGENIC
SBS	Chr2	141015	C-T	Hetero	INTERGENIC
SBS	Chr2	22647361	G-A	Hetero	INTERGENIC
SBS	Chr3	6704762	A-C	Hetero	INTERGENIC
SBS	Chr3	12161672	A-T	Hetero	INTERGENIC
SBS	Chr3	14866139	C-A	Hetero	INTERGENIC
SBS	Chr3	22477880	G-C	Hetero	INTERGENIC
SBS	Chr3	27919083	C-T	Homo	UTR_3_PRIME
SBS	Chr3	30388464	G-C	Hetero	UTR_5_PRIME
SBS	Chr4	22470274	A-T	Homo	INTRON
SBS	Chr4	28113727	G-A	Hetero	INTERGENIC
SBS	Chr5	1018334	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	2535357	C-A	Homo	INTERGENIC
SBS	Chr5	4523810	T-A	Hetero	INTRON
SBS	Chr5	6624808	C-G	Hetero	INTERGENIC
SBS	Chr5	18461399	T-C	Homo	INTERGENIC
SBS	Chr6	334353	C-T	Hetero	INTERGENIC
SBS	Chr6	7253946	C-A	Hetero	INTERGENIC
SBS	Chr6	9629073	A-G	Homo	INTERGENIC
SBS	Chr6	20726804	C-T	Hetero	INTERGENIC
SBS	Chr6	23533520	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	5528007	T-C	Homo	INTRON
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	2672388	T-C	Hetero	INTERGENIC
SBS	Chr8	9226653	G-A	Homo	INTERGENIC
SBS	Chr8	17519787	A-G	Homo	INTERGENIC
SBS	Chr8	23369870	G-A	Hetero	INTERGENIC
SBS	Chr9	4847555	C-T	Hetero	INTERGENIC
SBS	Chr9	10775415	A-T	Hetero	INTERGENIC
SBS	Chr11	6559468	C-T	Hetero	INTERGENIC
SBS	Chr11	15675007	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g126201
SBS	Chr11	22704250	A-C	Homo	INTERGENIC
SBS	Chr11	28341155	G-A	Hetero	INTERGENIC
SBS	Chr12	4418622	A-T	Hetero	INTERGENIC
SBS	Chr12	7996065	A-G	Hetero	INTERGENIC
SBS	Chr12	15978166	A-T	Hetero	INTERGENIC
SBS	Chr12	16149392	T-C	Hetero	INTERGENIC
SBS	Chr12	16758877	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1089727	1089731	4
Deletion	Chr9	13819060	13819072	12
Deletion	Chr9	13847115	13847121	6
Deletion	Chr8	17069631	17069635	4
Deletion	Chr11	23639130	23639131	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1401456	1568366
Inversion	Chr10	1401471	1568374

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes