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Mutant Information

Mutant Name	FN3860-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3860-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6201178 C-T Hetero INTERGENIC
SBS Chr1 26084303 A-G Hetero INTERGENIC
SBS Chr1 31472882 C-T Hetero INTERGENIC
SBS Chr2 2845620 G-A Hetero INTERGENIC
SBS Chr2 4033708 T-A Homo INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 17002768 T-C Homo INTERGENIC
SBS Chr3 14346372 G-A Hetero INTERGENIC
SBS Chr3 16528124 G-A Hetero INTERGENIC
SBS Chr3 22384951 C-T Hetero INTERGENIC
SBS Chr3 26654849 C-A Hetero INTERGENIC
SBS Chr4 1504739 T-C Hetero INTERGENIC
SBS Chr4 5710414 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Hetero INTERGENIC
SBS Chr5 5057121 G-C Hetero SYNONYMOUS_CODING
SBS Chr5 7332111 A-T Hetero INTERGENIC
SBS Chr5 11818313 C-A Homo INTERGENIC
SBS Chr5 11818314 C-A Homo INTERGENIC
SBS Chr5 20146638 A-C Hetero INTRON
SBS Chr5 23391313 C-G Hetero INTERGENIC
SBS Chr6 677092 A-T Hetero INTERGENIC
SBS Chr7 3136070 A-G Homo INTERGENIC
SBS Chr8 5488716 T-C Hetero INTERGENIC
SBS Chr8 5887228 G-T Hetero INTERGENIC
SBS Chr8 7877584 C-T Hetero INTRON
SBS Chr9 4200743 C-T Hetero INTERGENIC
SBS Chr9 4222007 T-C Hetero INTERGENIC
SBS Chr9 16946491 G-A Hetero INTERGENIC
SBS Chr10 18890 G-T Hetero INTERGENIC
SBS Chr10 12442148 A-T Hetero INTERGENIC
SBS Chr11 12754299 C-A Hetero INTERGENIC
SBS Chr12 1379282 C-T Homo INTRON
SBS Chr12 25886706 G-A Homo INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr11 1042001 1092000 49999 6
Deletion Chr11 1826993 1826996 3
Deletion Chr6 10059001 10115000 55999 4
Deletion Chr11 10635862 10635877 15
Deletion Chr12 11652227 11652538 311
Deletion Chr5 14158236 14158240 4
Deletion Chr3 16421077 16421100 23
Deletion Chr12 18860816 18860824 8
Deletion Chr3 20706654 20706658 4
Deletion Chr5 21359602 21359622 20
Deletion Chr9 21686181 21686191 10
Deletion Chr2 21927618 21927629 11
Deletion Chr11 22593573 22593588 15
Deletion Chr7 26748816 26748818 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr12 17238951 17238954 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2242324 2262659

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2258361 Chr8 18798631
Translocation Chr8 15942334 Chr4 2242326
Translocation Chr7 21412905 Chr3 4724612 OsKitaake07g177800
Translocation Chr7 21412915 Chr3 4724624 OsKitaake07g177800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6201178	C-T	Hetero	INTERGENIC
SBS	Chr1	26084303	A-G	Hetero	INTERGENIC
SBS	Chr1	31472882	C-T	Hetero	INTERGENIC
SBS	Chr2	2845620	G-A	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Homo	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	17002768	T-C	Homo	INTERGENIC
SBS	Chr3	14346372	G-A	Hetero	INTERGENIC
SBS	Chr3	16528124	G-A	Hetero	INTERGENIC
SBS	Chr3	22384951	C-T	Hetero	INTERGENIC
SBS	Chr3	26654849	C-A	Hetero	INTERGENIC
SBS	Chr4	1504739	T-C	Hetero	INTERGENIC
SBS	Chr4	5710414	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Hetero	INTERGENIC
SBS	Chr5	5057121	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	7332111	A-T	Hetero	INTERGENIC
SBS	Chr5	11818313	C-A	Homo	INTERGENIC
SBS	Chr5	11818314	C-A	Homo	INTERGENIC
SBS	Chr5	20146638	A-C	Hetero	INTRON
SBS	Chr5	23391313	C-G	Hetero	INTERGENIC
SBS	Chr6	677092	A-T	Hetero	INTERGENIC
SBS	Chr7	3136070	A-G	Homo	INTERGENIC
SBS	Chr8	5488716	T-C	Hetero	INTERGENIC
SBS	Chr8	5887228	G-T	Hetero	INTERGENIC
SBS	Chr8	7877584	C-T	Hetero	INTRON
SBS	Chr9	4200743	C-T	Hetero	INTERGENIC
SBS	Chr9	4222007	T-C	Hetero	INTERGENIC
SBS	Chr9	16946491	G-A	Hetero	INTERGENIC
SBS	Chr10	18890	G-T	Hetero	INTERGENIC
SBS	Chr10	12442148	A-T	Hetero	INTERGENIC
SBS	Chr11	12754299	C-A	Hetero	INTERGENIC
SBS	Chr12	1379282	C-T	Homo	INTRON
SBS	Chr12	25886706	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr11	1042001	1092000	49999	6
Deletion	Chr11	1826993	1826996	3
Deletion	Chr6	10059001	10115000	55999	4
Deletion	Chr11	10635862	10635877	15
Deletion	Chr12	11652227	11652538	311
Deletion	Chr5	14158236	14158240	4
Deletion	Chr3	16421077	16421100	23
Deletion	Chr12	18860816	18860824	8
Deletion	Chr3	20706654	20706658	4
Deletion	Chr5	21359602	21359622	20
Deletion	Chr9	21686181	21686191	10
Deletion	Chr2	21927618	21927629	11
Deletion	Chr11	22593573	22593588	15
Deletion	Chr7	26748816	26748818	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2242324	2262659

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes