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Mutant Information

Mutant Name	FN3862-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3862-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40168486 T-A Hetero INTERGENIC
SBS Chr2 21127087 C-A Hetero INTERGENIC
SBS Chr2 28447753 G-A Hetero INTERGENIC
SBS Chr2 28447754 T-A Hetero INTERGENIC
SBS Chr2 29857386 T-G Hetero INTERGENIC
SBS Chr2 35788732 A-T Homo INTERGENIC
SBS Chr4 16904817 A-G Hetero INTRON
SBS Chr6 12741438 C-T Hetero INTERGENIC
SBS Chr6 14904735 G-C Hetero INTERGENIC
SBS Chr6 18267052 G-A Hetero INTERGENIC
SBS Chr6 27087461 G-A Hetero INTERGENIC
SBS Chr7 6837687 C-T Hetero INTERGENIC
SBS Chr8 236776 C-T Hetero INTERGENIC
SBS Chr8 1311525 G-A Homo INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr9 13733996 T-A Homo INTERGENIC
SBS Chr9 19262668 T-G Hetero INTRON
SBS Chr10 6881896 T-G Hetero INTERGENIC
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr10 13138926 A-T Hetero INTERGENIC
SBS Chr11 7406433 C-G Hetero INTERGENIC
SBS Chr11 15152563 G-C Homo INTERGENIC
SBS Chr11 23127174 C-T Homo INTERGENIC
SBS Chr11 26453898 G-T Homo INTERGENIC
SBS Chr12 4176764 T-A Homo INTRON
SBS Chr12 9533720 G-A Hetero INTERGENIC
SBS Chr12 11209683 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 772001 983000 210999 29
Deletion Chr3 2966243 2966246 3
Deletion Chr12 4296087 4296093 6
Deletion Chr11 5582407 5582424 17
Deletion Chr5 10181001 10464000 282999
Deletion Chr8 10683908 10683912 4
Deletion Chr11 10832172 10832173 1
Deletion Chr8 16295250 16295253 3
Deletion Chr2 18332282 18332288 6
Deletion Chr10 23626027 23626033 6
Deletion Chr8 26891727 26891750 23
Deletion Chr4 29716913 29716914 1
Deletion Chr6 30759261 30759267 6

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 8297361 8297363 1 OsKitaake09g046800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7954171 7966314
Inversion Chr4 7954173 7966314

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5964468 Chr5 9872247
Translocation Chr12 13372409 Chr6 25867101 OsKitaake06g230300
Translocation Chr12 13372425 Chr6 25877071 OsKitaake06g230400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40168486	T-A	Hetero	INTERGENIC
SBS	Chr2	21127087	C-A	Hetero	INTERGENIC
SBS	Chr2	28447753	G-A	Hetero	INTERGENIC
SBS	Chr2	28447754	T-A	Hetero	INTERGENIC
SBS	Chr2	29857386	T-G	Hetero	INTERGENIC
SBS	Chr2	35788732	A-T	Homo	INTERGENIC
SBS	Chr4	16904817	A-G	Hetero	INTRON
SBS	Chr6	12741438	C-T	Hetero	INTERGENIC
SBS	Chr6	14904735	G-C	Hetero	INTERGENIC
SBS	Chr6	18267052	G-A	Hetero	INTERGENIC
SBS	Chr6	27087461	G-A	Hetero	INTERGENIC
SBS	Chr7	6837687	C-T	Hetero	INTERGENIC
SBS	Chr8	236776	C-T	Hetero	INTERGENIC
SBS	Chr8	1311525	G-A	Homo	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr9	13733996	T-A	Homo	INTERGENIC
SBS	Chr9	19262668	T-G	Hetero	INTRON
SBS	Chr10	6881896	T-G	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr10	13138926	A-T	Hetero	INTERGENIC
SBS	Chr11	7406433	C-G	Hetero	INTERGENIC
SBS	Chr11	15152563	G-C	Homo	INTERGENIC
SBS	Chr11	23127174	C-T	Homo	INTERGENIC
SBS	Chr11	26453898	G-T	Homo	INTERGENIC
SBS	Chr12	4176764	T-A	Homo	INTRON
SBS	Chr12	9533720	G-A	Hetero	INTERGENIC
SBS	Chr12	11209683	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	772001	983000	210999	29
Deletion	Chr3	2966243	2966246	3
Deletion	Chr12	4296087	4296093	6
Deletion	Chr11	5582407	5582424	17
Deletion	Chr5	10181001	10464000	282999
Deletion	Chr8	10683908	10683912	4
Deletion	Chr11	10832172	10832173	1
Deletion	Chr8	16295250	16295253	3
Deletion	Chr2	18332282	18332288	6
Deletion	Chr10	23626027	23626033	6
Deletion	Chr8	26891727	26891750	23
Deletion	Chr4	29716913	29716914	1
Deletion	Chr6	30759261	30759267	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7954171	7966314
Inversion	Chr4	7954173	7966314

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes