Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3863-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3863-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8410757 | T-G | Hetero | INTRON | |
| SBS | Chr1 | 18991450 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 37605595 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 44165630 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 12923640 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17421579 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 5643849 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 9119882 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 13105355 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 20357236 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21278757 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35750672 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 1138178 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 2210424 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 8004736 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17942232 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21483822 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 786783 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27243305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29605310 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3316810 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 4124823 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13072495 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28231081 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 3697277 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5361492 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18906723 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 14436130 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14846939 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 19784654 | T-A | Homo | INTRON | |
| SBS | Chr12 | 3569849 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 17814439 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18519733 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25803778 | G-A | Hetero | INTRON |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1664078 | 1664084 | 6 | |
| Deletion | Chr4 | 3574694 | 3574699 | 5 | |
| Deletion | Chr3 | 8723320 | 8723325 | 5 | |
| Deletion | Chr6 | 11313451 | 11313469 | 18 | |
| Deletion | Chr6 | 20207619 | 20207624 | 5 | |
| Deletion | Chr5 | 21814625 | 21814627 | 2 | |
| Deletion | Chr11 | 24877105 | 24877106 | 1 | OsKitaake11g202300 |
| Deletion | Chr7 | 25197994 | 25197995 | 1 | |
| Deletion | Chr3 | 31483307 | 31483315 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 31578026 | 31578028 | 1 | OsKitaake01g317300  |
| Insertion | Chr6 | 6313680 | 6313688 | 7 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 21749820 | 21983502 | OsKitaake12g172500 |
| Inversion | Chr12 | 21749826 | 21983503 | OsKitaake12g172500 |