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| Mutant Information |
|---|
| Mutant Name | FN3864-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3864-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17564653 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 43861023 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 8558484 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22512293 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33994056 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 36050314 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 7760208 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 15329929 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15329930 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 15604078 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5258621 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8800888 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6401551 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9944968 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12660360 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 14900018 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28562141 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7597974 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 9648961 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16565062 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21163191 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 855518 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 855519 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10265791 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3852141 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17771636 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 26631435 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 14459657 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 7261892 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 7284141 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12196447 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17152897 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 17987384 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2210941 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17449443 | A-T | Homo | INTRON | |
| SBS | Chr12 | 25223055 | C-T | Hetero | SYNONYMOUS_CODING |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 652966 | 652967 | 1 | |
| Deletion | Chr5 | 5322062 | 5322067 | 5 | |
| Deletion | Chr3 | 8868435 | 8868442 | 7 | |
| Deletion | Chr9 | 9234080 | 9234085 | 5 | |
| Deletion | Chr9 | 9840229 | 9840241 | 12 | |
| Deletion | Chr7 | 12101594 | 12101611 | 17 | |
| Deletion | Chr11 | 16351769 | 16351777 | 8 | |
| Deletion | Chr6 | 20351220 | 20351221 | 1 | OsKitaake06g181900 |
| Deletion | Chr8 | 23918019 | 23918020 | 1 | |
| Deletion | Chr1 | 25151565 | 25151569 | 4 | |
| Deletion | Chr2 | 35332312 | 35332322 | 10 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 29307521 | 29307524 | 2 | |
| Insertion | Chr11 | 22306626 | 22306629 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 1215685 | Chr4 | 11393405 | |
| Translocation | Chr7 | 12451999 | Chr2 | 7105702 | |
| Translocation | Chr7 | 12452475 | Chr2 | 7105698 | |
| Translocation | Chr8 | 14433348 | Chr3 | 15351148 |