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| Mutant Information |
|---|
| Mutant Name | FN3865-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3865-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 41041541 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10110092 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24833641 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 27110222 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 269082 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 544896 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3259342 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3890529 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17600558 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 31373681 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g246200 |
| SBS | Chr5 | 6465810 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25475138 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 27180743 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11729713 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16236646 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16825915 | T-C | Homo | INTRON | |
| SBS | Chr7 | 18106203 | G-A | Homo | INTRON | |
| SBS | Chr8 | 26149494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8311378 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 226265 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13145000 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7961486 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15240083 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21344102 | G-A | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1129000 | 1129021 | 21 | |
| Deletion | Chr3 | 2872438 | 2872439 | 1 | |
| Deletion | Chr12 | 3949215 | 3949222 | 7 | |
| Deletion | Chr10 | 5135594 | 5135596 | 2 | |
| Deletion | Chr6 | 9539295 | 9539299 | 4 | |
| Deletion | Chr5 | 12319245 | 12319247 | 2 | |
| Deletion | Chr12 | 17096236 | 17096243 | 7 | |
| Deletion | Chr10 | 19510375 | 19510380 | 5 | |
| Deletion | Chr1 | 20115569 | 20115576 | 7 | |
| Deletion | Chr1 | 20431868 | 20431869 | 1 | |
| Deletion | Chr4 | 20675308 | 20675309 | 1 | |
| Deletion | Chr2 | 22912597 | 22912598 | 1 | |
| Deletion | Chr11 | 23968016 | 23968018 | 2 | |
| Deletion | Chr4 | 25203399 | 25203402 | 3 | |
| Deletion | Chr4 | 25673772 | 25673778 | 6 | |
| Deletion | Chr2 | 26641001 | 26696000 | 54999 | 7 |
| Deletion | Chr12 | 26919323 | 26919342 | 19 | OsKitaake12g225300 |
| Deletion | Chr2 | 28662225 | 28662230 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 3626804 | 3626807 | 2 | |
| Insertion | Chr9 | 19668113 | 19668116 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 21477428 | Chr1 | 27883815 | OsKitaake01g270800 |
| Translocation | Chr6 | 21477432 | Chr1 | 27884447 | OsKitaake01g270800 |