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Mutant Information

Mutant Name	FN3866-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3866-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5832259 A-G Hetero INTERGENIC
SBS Chr1 16234833 A-G Hetero INTERGENIC
SBS Chr2 1172515 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g017400
SBS Chr2 4209147 C-T Homo START_GAINED
SBS Chr2 11413090 C-G Hetero INTERGENIC
SBS Chr2 32289396 A-T Homo INTERGENIC
SBS Chr3 4371047 G-A Hetero INTERGENIC
SBS Chr3 12245222 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g165200
SBS Chr3 14666009 C-T Homo INTERGENIC
SBS Chr3 14666011 T-A Homo INTERGENIC
SBS Chr4 16968128 C-G Hetero INTERGENIC
SBS Chr4 24117901 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g154500
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr4 26413705 A-C Hetero INTERGENIC
SBS Chr5 1467559 C-G Homo INTERGENIC
SBS Chr5 11655209 T-A Homo INTERGENIC
SBS Chr5 17543666 G-A Hetero UTR_3_PRIME
SBS Chr5 25089834 A-T Hetero INTERGENIC
SBS Chr5 28702953 G-A Hetero INTERGENIC
SBS Chr5 29462821 C-T Hetero INTERGENIC
SBS Chr7 10557328 C-A Hetero INTERGENIC
SBS Chr7 25292193 C-T Homo INTERGENIC
SBS Chr7 25292196 C-T Homo INTERGENIC
SBS Chr7 25316756 A-G Homo INTERGENIC
SBS Chr10 13869542 T-C Hetero INTRON
SBS Chr11 25314486 A-T Hetero INTERGENIC
SBS Chr11 27024739 G-A Hetero INTRON
SBS Chr11 29517354 T-A Hetero INTERGENIC
SBS Chr12 5757595 G-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 6422319 6422322 3
Deletion Chr4 10451260 10451269 9
Deletion Chr9 19669234 19669239 5
Deletion Chr8 20857909 20857910 1
Deletion Chr5 27046217 27046220 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28160722 28160725 2
Insertion Chr6 12300411 12300414 2
Insertion Chr8 25883556 25883559 2
Insertion Chr9 21594389 21594392 2
Insertion Chr10 9339910 9339913 2
Insertion Chr1 25537567 25537570 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 23041858 23434856 2
Inversion Chr11 24748440 25201064
Inversion Chr11 25201043 26123489 OsKitaake11g211100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5832259	A-G	Hetero	INTERGENIC
SBS	Chr1	16234833	A-G	Hetero	INTERGENIC
SBS	Chr2	1172515	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g017400
SBS	Chr2	4209147	C-T	Homo	START_GAINED
SBS	Chr2	11413090	C-G	Hetero	INTERGENIC
SBS	Chr2	32289396	A-T	Homo	INTERGENIC
SBS	Chr3	4371047	G-A	Hetero	INTERGENIC
SBS	Chr3	12245222	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g165200
SBS	Chr3	14666009	C-T	Homo	INTERGENIC
SBS	Chr3	14666011	T-A	Homo	INTERGENIC
SBS	Chr4	16968128	C-G	Hetero	INTERGENIC
SBS	Chr4	24117901	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g154500
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr4	26413705	A-C	Hetero	INTERGENIC
SBS	Chr5	1467559	C-G	Homo	INTERGENIC
SBS	Chr5	11655209	T-A	Homo	INTERGENIC
SBS	Chr5	17543666	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	25089834	A-T	Hetero	INTERGENIC
SBS	Chr5	28702953	G-A	Hetero	INTERGENIC
SBS	Chr5	29462821	C-T	Hetero	INTERGENIC
SBS	Chr7	10557328	C-A	Hetero	INTERGENIC
SBS	Chr7	25292193	C-T	Homo	INTERGENIC
SBS	Chr7	25292196	C-T	Homo	INTERGENIC
SBS	Chr7	25316756	A-G	Homo	INTERGENIC
SBS	Chr10	13869542	T-C	Hetero	INTRON
SBS	Chr11	25314486	A-T	Hetero	INTERGENIC
SBS	Chr11	27024739	G-A	Hetero	INTRON
SBS	Chr11	29517354	T-A	Hetero	INTERGENIC
SBS	Chr12	5757595	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	6422319	6422322	3
Deletion	Chr4	10451260	10451269	9
Deletion	Chr9	19669234	19669239	5
Deletion	Chr8	20857909	20857910	1
Deletion	Chr5	27046217	27046220	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	23041858	23434856	2
Inversion	Chr11	24748440	25201064
Inversion	Chr11	25201043	26123489	OsKitaake11g211100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes