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| Mutant Information |
|---|
| Mutant Name | FN3867-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3867-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5188856 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11022759 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 13695266 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16466390 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 74839 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 25151291 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 27069095 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 4592997 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5328010 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5297301 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 8491308 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9554375 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34751669 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17628364 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 21926103 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 23125354 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 14307370 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23399259 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g206000 |
| SBS | Chr6 | 23399260 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g206000 |
| SBS | Chr6 | 25352012 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25660702 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16359170 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21147418 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25317817 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 26822527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18348950 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 18348957 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 18351059 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 18351185 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 2052382 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2052383 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14994596 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 21386156 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10407119 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 19497559 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2715001 | 2753000 | 37999 | 4 |
| Deletion | Chr5 | 5389277 | 5389285 | 8 | |
| Deletion | Chr1 | 7436233 | 7436234 | 1 | |
| Deletion | Chr8 | 9334088 | 9334102 | 14 | |
| Deletion | Chr10 | 11829471 | 11829472 | 1 | |
| Deletion | Chr12 | 13026776 | 13026795 | 19 | |
| Deletion | Chr12 | 13585361 | 13585362 | 1 | OsKitaake12g112100 |
| Deletion | Chr11 | 19494001 | 19514000 | 19999 | |
| Deletion | Chr1 | 43984359 | 43984361 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25051866 | 25051869 | 2 | |
| Insertion | Chr5 | 9776876 | 9776879 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2754392 | 2754514 | |
| Inversion | Chr12 | 13591651 | 13605574 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5804414 | Chr10 | 2555775 | OsKitaake10g020100 |
| Translocation | Chr12 | 5804641 | Chr10 | 2555777 | 2 |
| Translocation | Chr11 | 19514358 | Chr3 | 24670410 | |
| Translocation | Chr11 | 19515000 | Chr3 | 24670411 |