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Mutant Information

Mutant Name	FN3868-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3868-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1002360 G-T Hetero INTERGENIC
SBS Chr2 3349712 G-T Hetero INTERGENIC
SBS Chr2 12331949 G-A Homo INTERGENIC
SBS Chr3 12125559 A-G Homo INTRON
SBS Chr3 15242379 T-C Homo INTERGENIC
SBS Chr3 20624164 A-G Homo INTERGENIC
SBS Chr3 25952492 T-A Homo INTERGENIC
SBS Chr4 14597782 G-A Homo INTERGENIC
SBS Chr5 377460 G-T Homo INTERGENIC
SBS Chr5 13446852 T-C Hetero INTERGENIC
SBS Chr6 6838146 T-C Homo SYNONYMOUS_CODING
SBS Chr9 1957250 A-C Homo INTERGENIC
SBS Chr9 3893011 T-A Homo INTERGENIC
SBS Chr9 12546630 T-C Hetero INTERGENIC
SBS Chr9 19700568 G-A Hetero INTERGENIC
SBS Chr10 12528327 C-T Homo INTERGENIC
SBS Chr10 13143542 C-T Homo INTERGENIC
SBS Chr10 21209286 T-C Homo INTERGENIC
SBS Chr10 23048877 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g193500
SBS Chr11 11697021 A-T Hetero INTRON
SBS Chr11 19889464 T-G Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7042016 7042025 9
Deletion Chr4 7302351 7302356 5
Deletion Chr1 22055001 22408000 352999 21
Deletion Chr3 37001516 37001525 9 OsKitaake03g413600
Deletion Chr1 41315613 41315615 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13788995 13788998 2
Insertion Chr6 16138059 16138062 2
Insertion Chr6 29136797 29136800 2
Insertion Chr11 25738628 25738631 2
Insertion Chr5 30236466 30236474 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 6896990 6898355
Inversion Chr11 6896991 6898351

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14042404 Chr1 22045616

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1002360	G-T	Hetero	INTERGENIC
SBS	Chr2	3349712	G-T	Hetero	INTERGENIC
SBS	Chr2	12331949	G-A	Homo	INTERGENIC
SBS	Chr3	12125559	A-G	Homo	INTRON
SBS	Chr3	15242379	T-C	Homo	INTERGENIC
SBS	Chr3	20624164	A-G	Homo	INTERGENIC
SBS	Chr3	25952492	T-A	Homo	INTERGENIC
SBS	Chr4	14597782	G-A	Homo	INTERGENIC
SBS	Chr5	377460	G-T	Homo	INTERGENIC
SBS	Chr5	13446852	T-C	Hetero	INTERGENIC
SBS	Chr6	6838146	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr9	1957250	A-C	Homo	INTERGENIC
SBS	Chr9	3893011	T-A	Homo	INTERGENIC
SBS	Chr9	12546630	T-C	Hetero	INTERGENIC
SBS	Chr9	19700568	G-A	Hetero	INTERGENIC
SBS	Chr10	12528327	C-T	Homo	INTERGENIC
SBS	Chr10	13143542	C-T	Homo	INTERGENIC
SBS	Chr10	21209286	T-C	Homo	INTERGENIC
SBS	Chr10	23048877	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g193500
SBS	Chr11	11697021	A-T	Hetero	INTRON
SBS	Chr11	19889464	T-G	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7042016	7042025	9
Deletion	Chr4	7302351	7302356	5
Deletion	Chr1	22055001	22408000	352999	21
Deletion	Chr3	37001516	37001525	9	OsKitaake03g413600
Deletion	Chr1	41315613	41315615	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6896990	6898355
Inversion	Chr11	6896991	6898351

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes