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| Mutant Information |
|---|
| Mutant Name | FN3871-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3871-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24014504 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32635025 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 30481308 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 30481310 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 6679633 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19847650 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25065704 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27737786 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32719716 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 36338674 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15457216 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6695787 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20974039 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 7323374 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28624833 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 4964874 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5476293 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12576717 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17738425 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18232383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21546265 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 23340151 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1158346 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1158347 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3343251 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13115543 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18513095 | G-A | Homo | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 106660 | 106661 | 1 | |
| Deletion | Chr4 | 133041 | 133053 | 12 | |
| Deletion | Chr4 | 5219664 | 5219670 | 6 | |
| Deletion | Chr3 | 14131225 | 14131233 | 8 | |
| Deletion | Chr12 | 14766508 | 14766509 | 1 | |
| Deletion | Chr7 | 15312379 | 15312380 | 1 | |
| Deletion | Chr11 | 15504324 | 15504325 | 1 | |
| Deletion | Chr9 | 16912451 | 16912520 | 69 | |
| Deletion | Chr6 | 19283001 | 19342000 | 58999 | 2 |
| Deletion | Chr1 | 23692627 | 23692628 | 1 | |
| Deletion | Chr1 | 25937547 | 25937548 | 1 | |
| Deletion | Chr2 | 30432891 | 30432892 | 1 | |
| Deletion | Chr1 | 31213232 | 31213233 | 1 | |
| Deletion | Chr4 | 31610019 | 31610021 | 2 | OsKitaake04g249400 |
| Deletion | Chr4 | 33876172 | 33876175 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 2490580 | 2490583 | 2 | |
| Insertion | Chr4 | 10496893 | 10496945 | 51 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 25972905 | 26105171 | |
| Inversion | Chr5 | 26627631 | 27133511 | |
| Inversion | Chr5 | 26627654 | 27133527 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 2839900 | Chr2 | 32272578 | OsKitaake06g038700 |
| Translocation | Chr6 | 2839906 | Chr2 | 32273148 | OsKitaake06g038700 |
| Translocation | Chr11 | 28334897 | Chr4 | 13670910 | OsKitaake11g232501 |
| Translocation | Chr11 | 28335165 | Chr4 | 13670577 | OsKitaake11g232501 |