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Mutant Information

Mutant Name	FN3872-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3872-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14061180 C-A Hetero INTERGENIC
SBS Chr2 3025787 C-T Hetero INTERGENIC
SBS Chr2 17008907 G-T Hetero INTERGENIC
SBS Chr2 33223284 G-A Hetero INTERGENIC
SBS Chr3 5410511 C-T Hetero INTERGENIC
SBS Chr3 6487002 C-T Hetero INTERGENIC
SBS Chr3 13608582 C-T Hetero INTERGENIC
SBS Chr3 19890819 G-A Hetero INTERGENIC
SBS Chr3 24967696 C-A Hetero INTRON
SBS Chr3 34575708 C-A Homo INTERGENIC
SBS Chr4 3845748 C-T Hetero INTERGENIC
SBS Chr4 7410857 T-A Hetero INTERGENIC
SBS Chr4 7410858 T-A Hetero INTERGENIC
SBS Chr5 11812913 G-A Hetero INTERGENIC
SBS Chr6 10544638 A-T Hetero INTERGENIC
SBS Chr6 13515970 C-T Hetero INTERGENIC
SBS Chr7 17432816 G-A Hetero INTERGENIC
SBS Chr7 28582289 T-A Homo INTERGENIC
SBS Chr8 16388377 C-T Homo STOP_GAINED OsKitaake08g125900
SBS Chr9 6749997 C-T Hetero INTERGENIC
SBS Chr9 8702739 G-A Hetero UTR_5_PRIME
SBS Chr9 18096273 C-T Hetero INTERGENIC
SBS Chr11 19075887 C-T Homo INTERGENIC
SBS Chr11 21360222 G-A Hetero INTERGENIC
SBS Chr12 2494818 G-A Hetero INTERGENIC
SBS Chr12 15299290 T-C Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4146503 4146504 1
Deletion Chr9 9243001 9264000 20999 3
Deletion Chr1 11799813 11799816 3
Deletion Chr4 12095032 12095043 11
Deletion Chr10 13656331 13656334 3
Deletion Chr12 18721212 18721216 4
Deletion Chr9 20540555 20540557 2
Deletion Chr11 26875615 26875617 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24259226 24259229 2
Insertion Chr4 26370609 26370612 2
Insertion Chr7 17162609 17162611 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 8067078 8127091
Inversion Chr12 8067087 8127092
Inversion Chr3 19813002 19871238
Inversion Chr2 32755850 33591772

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19668778 Chr6 27130053 OsKitaake06g243900
Translocation Chr9 19668782 Chr6 27130482 OsKitaake06g243900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14061180	C-A	Hetero	INTERGENIC
SBS	Chr2	3025787	C-T	Hetero	INTERGENIC
SBS	Chr2	17008907	G-T	Hetero	INTERGENIC
SBS	Chr2	33223284	G-A	Hetero	INTERGENIC
SBS	Chr3	5410511	C-T	Hetero	INTERGENIC
SBS	Chr3	6487002	C-T	Hetero	INTERGENIC
SBS	Chr3	13608582	C-T	Hetero	INTERGENIC
SBS	Chr3	19890819	G-A	Hetero	INTERGENIC
SBS	Chr3	24967696	C-A	Hetero	INTRON
SBS	Chr3	34575708	C-A	Homo	INTERGENIC
SBS	Chr4	3845748	C-T	Hetero	INTERGENIC
SBS	Chr4	7410857	T-A	Hetero	INTERGENIC
SBS	Chr4	7410858	T-A	Hetero	INTERGENIC
SBS	Chr5	11812913	G-A	Hetero	INTERGENIC
SBS	Chr6	10544638	A-T	Hetero	INTERGENIC
SBS	Chr6	13515970	C-T	Hetero	INTERGENIC
SBS	Chr7	17432816	G-A	Hetero	INTERGENIC
SBS	Chr7	28582289	T-A	Homo	INTERGENIC
SBS	Chr8	16388377	C-T	Homo	STOP_GAINED	OsKitaake08g125900
SBS	Chr9	6749997	C-T	Hetero	INTERGENIC
SBS	Chr9	8702739	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	18096273	C-T	Hetero	INTERGENIC
SBS	Chr11	19075887	C-T	Homo	INTERGENIC
SBS	Chr11	21360222	G-A	Hetero	INTERGENIC
SBS	Chr12	2494818	G-A	Hetero	INTERGENIC
SBS	Chr12	15299290	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4146503	4146504	1
Deletion	Chr9	9243001	9264000	20999	3
Deletion	Chr1	11799813	11799816	3
Deletion	Chr4	12095032	12095043	11
Deletion	Chr10	13656331	13656334	3
Deletion	Chr12	18721212	18721216	4
Deletion	Chr9	20540555	20540557	2
Deletion	Chr11	26875615	26875617	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8067078	8127091
Inversion	Chr12	8067087	8127092
Inversion	Chr3	19813002	19871238
Inversion	Chr2	32755850	33591772

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes