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Mutant Information

Mutant Name	FN3875-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3875-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9667641 T-C Homo INTERGENIC
SBS Chr1 29851927 G-A Homo INTERGENIC
SBS Chr2 5692955 A-T Homo INTERGENIC
SBS Chr4 18511292 G-A Hetero INTERGENIC
SBS Chr4 33655937 C-A Hetero INTERGENIC
SBS Chr4 36339780 A-C Hetero STOP_LOST OsKitaake04g315300
SBS Chr5 12756357 G-T Homo INTERGENIC
SBS Chr6 3991076 T-A Homo INTERGENIC
SBS Chr6 10046497 G-A Hetero INTERGENIC
SBS Chr6 16858636 G-A Hetero INTERGENIC
SBS Chr7 12708531 C-T Hetero INTERGENIC
SBS Chr7 12708532 A-T Hetero INTERGENIC
SBS Chr7 17850077 A-T Hetero INTERGENIC
SBS Chr7 22871026 A-G Hetero UTR_3_PRIME
SBS Chr8 17509411 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g131300
SBS Chr8 26081161 C-G Homo INTERGENIC
SBS Chr9 3420008 C-T Hetero INTERGENIC
SBS Chr9 8795258 C-T Hetero INTERGENIC
SBS Chr9 18534746 A-G Homo NON_SYNONYMOUS_CODING OsKitaake09g145800
SBS Chr10 12103583 T-C Homo INTERGENIC
SBS Chr10 14790039 T-A Hetero INTERGENIC
SBS Chr11 13832480 G-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 927712 927731 19
Deletion Chr2 2099399 2099401 2
Deletion Chr5 4317053 4317055 2
Deletion Chr3 10295517 10295532 15
Deletion Chr4 11700007 11700012 5
Deletion Chr8 14052339 14052343 4
Deletion Chr3 16366521 16366530 9
Deletion Chr5 17708692 17708707 15
Deletion Chr5 17910538 17910539 1
Deletion Chr3 18535625 18535626 1
Deletion Chr5 19250450 19250456 6
Deletion Chr10 22652741 22652744 3
Deletion Chr3 24204468 24204473 5
Deletion Chr5 25031693 25031697 4
Deletion Chr6 29537001 29624000 86999 15
Deletion Chr1 31177082 31177093 11 OsKitaake01g311600
Deletion Chr3 36310444 36310464 20
Deletion Chr1 40600363 40600370 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2161554 2161556 1
Insertion Chr8 10713819 10713823 3
Insertion Chr10 19319602 19319606 3
Insertion Chr2 35328984 35328987 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 29491502 29606302 2
Inversion Chr7 29491503 29606306 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9667641	T-C	Homo	INTERGENIC
SBS	Chr1	29851927	G-A	Homo	INTERGENIC
SBS	Chr2	5692955	A-T	Homo	INTERGENIC
SBS	Chr4	18511292	G-A	Hetero	INTERGENIC
SBS	Chr4	33655937	C-A	Hetero	INTERGENIC
SBS	Chr4	36339780	A-C	Hetero	STOP_LOST	OsKitaake04g315300
SBS	Chr5	12756357	G-T	Homo	INTERGENIC
SBS	Chr6	3991076	T-A	Homo	INTERGENIC
SBS	Chr6	10046497	G-A	Hetero	INTERGENIC
SBS	Chr6	16858636	G-A	Hetero	INTERGENIC
SBS	Chr7	12708531	C-T	Hetero	INTERGENIC
SBS	Chr7	12708532	A-T	Hetero	INTERGENIC
SBS	Chr7	17850077	A-T	Hetero	INTERGENIC
SBS	Chr7	22871026	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	17509411	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g131300
SBS	Chr8	26081161	C-G	Homo	INTERGENIC
SBS	Chr9	3420008	C-T	Hetero	INTERGENIC
SBS	Chr9	8795258	C-T	Hetero	INTERGENIC
SBS	Chr9	18534746	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g145800
SBS	Chr10	12103583	T-C	Homo	INTERGENIC
SBS	Chr10	14790039	T-A	Hetero	INTERGENIC
SBS	Chr11	13832480	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	927712	927731	19
Deletion	Chr2	2099399	2099401	2
Deletion	Chr5	4317053	4317055	2
Deletion	Chr3	10295517	10295532	15
Deletion	Chr4	11700007	11700012	5
Deletion	Chr8	14052339	14052343	4
Deletion	Chr3	16366521	16366530	9
Deletion	Chr5	17708692	17708707	15
Deletion	Chr5	17910538	17910539	1
Deletion	Chr3	18535625	18535626	1
Deletion	Chr5	19250450	19250456	6
Deletion	Chr10	22652741	22652744	3
Deletion	Chr3	24204468	24204473	5
Deletion	Chr5	25031693	25031697	4
Deletion	Chr6	29537001	29624000	86999	15
Deletion	Chr1	31177082	31177093	11	OsKitaake01g311600
Deletion	Chr3	36310444	36310464	20
Deletion	Chr1	40600363	40600370	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	29491502	29606302	2
Inversion	Chr7	29491503	29606306	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes