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Mutant Information

Mutant Name	FN3877-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3877-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5724070 G-A Hetero INTERGENIC
SBS Chr1 7645264 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g096100
SBS Chr1 20409373 T-A Hetero INTERGENIC
SBS Chr1 42750791 G-A Homo INTRON
SBS Chr2 30359613 T-C Homo INTERGENIC
SBS Chr2 30359974 G-T Homo INTERGENIC
SBS Chr3 33636706 T-A Hetero INTERGENIC
SBS Chr3 33636707 C-A Hetero INTERGENIC
SBS Chr3 35629074 C-T Hetero INTERGENIC
SBS Chr3 35629081 A-G Hetero INTERGENIC
SBS Chr4 10322307 G-A Homo INTERGENIC
SBS Chr4 25538212 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g175966
SBS Chr5 7780255 T-C Homo NON_SYNONYMOUS_CODING OsKitaake05g077600
SBS Chr5 12142017 G-C Homo INTERGENIC
SBS Chr6 15887955 C-T Hetero INTERGENIC
SBS Chr7 1375684 T-A Hetero INTERGENIC
SBS Chr7 12587781 C-A Hetero INTERGENIC
SBS Chr8 5417511 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g058900
SBS Chr8 23077624 G-T Homo INTRON
SBS Chr9 2136006 C-T Homo INTERGENIC
SBS Chr9 8203099 G-A Hetero INTERGENIC
SBS Chr10 2857810 C-A Hetero UTR_3_PRIME
SBS Chr10 6075302 T-A Hetero INTERGENIC
SBS Chr10 8101032 C-T Hetero INTERGENIC
SBS Chr10 13113050 A-T Hetero INTERGENIC
SBS Chr10 19697939 G-T Hetero INTERGENIC
SBS Chr11 7160149 T-A Hetero INTERGENIC
SBS Chr11 10828474 A-G Hetero INTERGENIC
SBS Chr11 15891850 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g127500
SBS Chr11 25119889 T-C Homo INTERGENIC
SBS Chr12 11494319 A-T Hetero INTRON
SBS Chr12 21671626 A-G Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1264972 1264980 8 OsKitaake11g015300
Deletion Chr11 1353316 1353325 9 OsKitaake11g017000
Deletion Chr7 1714507 1714508 1
Deletion Chr9 2749258 2749411 153
Deletion Chr1 3239170 3239171 1
Deletion Chr3 4887863 4887866 3
Deletion Chr3 8442128 8442139 11
Deletion Chr1 10920840 10920847 7
Deletion Chr12 13755403 13755406 3
Deletion Chr3 16945144 16945148 4
Deletion Chr2 20947771 20947780 9
Deletion Chr1 35972186 35972198 12

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27018465 27018470 4
Insertion Chr5 29219645 29219652 6
Insertion Chr8 20306069 20306072 2
Insertion Chr8 24192526 24192529 2
Insertion Chr12 23550582 23550585 2
Insertion Chr11 26165991 26165996 4

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1195646 Chr3 32262635 OsKitaake03g342301
Translocation Chr6 1195650 Chr3 32261218
Translocation Chr12 15377159 Chr7 16308122
Translocation Chr12 18703118 Chr1 12836974 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5724070	G-A	Hetero	INTERGENIC
SBS	Chr1	7645264	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g096100
SBS	Chr1	20409373	T-A	Hetero	INTERGENIC
SBS	Chr1	42750791	G-A	Homo	INTRON
SBS	Chr2	30359613	T-C	Homo	INTERGENIC
SBS	Chr2	30359974	G-T	Homo	INTERGENIC
SBS	Chr3	33636706	T-A	Hetero	INTERGENIC
SBS	Chr3	33636707	C-A	Hetero	INTERGENIC
SBS	Chr3	35629074	C-T	Hetero	INTERGENIC
SBS	Chr3	35629081	A-G	Hetero	INTERGENIC
SBS	Chr4	10322307	G-A	Homo	INTERGENIC
SBS	Chr4	25538212	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g175966
SBS	Chr5	7780255	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g077600
SBS	Chr5	12142017	G-C	Homo	INTERGENIC
SBS	Chr6	15887955	C-T	Hetero	INTERGENIC
SBS	Chr7	1375684	T-A	Hetero	INTERGENIC
SBS	Chr7	12587781	C-A	Hetero	INTERGENIC
SBS	Chr8	5417511	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g058900
SBS	Chr8	23077624	G-T	Homo	INTRON
SBS	Chr9	2136006	C-T	Homo	INTERGENIC
SBS	Chr9	8203099	G-A	Hetero	INTERGENIC
SBS	Chr10	2857810	C-A	Hetero	UTR_3_PRIME
SBS	Chr10	6075302	T-A	Hetero	INTERGENIC
SBS	Chr10	8101032	C-T	Hetero	INTERGENIC
SBS	Chr10	13113050	A-T	Hetero	INTERGENIC
SBS	Chr10	19697939	G-T	Hetero	INTERGENIC
SBS	Chr11	7160149	T-A	Hetero	INTERGENIC
SBS	Chr11	10828474	A-G	Hetero	INTERGENIC
SBS	Chr11	15891850	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g127500
SBS	Chr11	25119889	T-C	Homo	INTERGENIC
SBS	Chr12	11494319	A-T	Hetero	INTRON
SBS	Chr12	21671626	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1264972	1264980	8	OsKitaake11g015300
Deletion	Chr11	1353316	1353325	9	OsKitaake11g017000
Deletion	Chr7	1714507	1714508	1
Deletion	Chr9	2749258	2749411	153
Deletion	Chr1	3239170	3239171	1
Deletion	Chr3	4887863	4887866	3
Deletion	Chr3	8442128	8442139	11
Deletion	Chr1	10920840	10920847	7
Deletion	Chr12	13755403	13755406	3
Deletion	Chr3	16945144	16945148	4
Deletion	Chr2	20947771	20947780	9
Deletion	Chr1	35972186	35972198	12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1195646	Chr3	32262635	OsKitaake03g342301
Translocation	Chr6	1195650	Chr3	32261218
Translocation	Chr12	15377159	Chr7	16308122
Translocation	Chr12	18703118	Chr1	12836974	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes