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Mutant Information

Mutant Name	FN3879-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3879-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6936158 A-T Hetero INTERGENIC
SBS Chr1 8561802 G-A Hetero INTERGENIC
SBS Chr1 16020129 A-C Homo INTERGENIC
SBS Chr1 16988898 G-T Homo INTERGENIC
SBS Chr1 23157199 C-T Hetero INTERGENIC
SBS Chr1 35871648 C-G Hetero INTERGENIC
SBS Chr1 37937180 C-T Hetero INTERGENIC
SBS Chr2 2531287 G-A Hetero INTERGENIC
SBS Chr2 9565557 A-C Homo INTERGENIC
SBS Chr2 11887866 G-A Hetero INTERGENIC
SBS Chr2 34813872 A-T Hetero INTERGENIC
SBS Chr3 22537816 C-T Hetero INTERGENIC
SBS Chr3 28109562 A-G Hetero INTRON
SBS Chr3 31576293 A-G Hetero INTRON
SBS Chr4 1249423 G-C Hetero INTRON
SBS Chr4 14260429 C-G Hetero INTERGENIC
SBS Chr4 15457278 C-G Hetero INTERGENIC
SBS Chr5 22835641 T-C Hetero INTERGENIC
SBS Chr6 16546815 A-C Homo INTERGENIC
SBS Chr7 12468481 C-A Homo INTERGENIC
SBS Chr7 15320370 A-G Homo INTERGENIC
SBS Chr7 22354535 G-A Hetero INTERGENIC
SBS Chr7 27605513 A-T Hetero INTERGENIC
SBS Chr8 10662664 C-T Hetero INTERGENIC
SBS Chr8 10877805 T-A Hetero INTRON
SBS Chr8 11993688 C-T Hetero INTERGENIC
SBS Chr8 22089336 C-T Hetero INTERGENIC
SBS Chr10 7464449 A-C Hetero INTERGENIC
SBS Chr10 9538073 A-G Hetero INTERGENIC
SBS Chr10 16950635 G-A Hetero INTERGENIC
SBS Chr10 23651172 G-A Hetero UTR_5_PRIME
SBS Chr10 23909879 G-A Hetero INTRON
SBS Chr11 3019447 C-T Hetero INTERGENIC
SBS Chr11 13172108 C-A Hetero INTERGENIC
SBS Chr11 27283831 G-A Hetero INTERGENIC
SBS Chr12 13085814 T-A Hetero INTERGENIC
SBS Chr12 14747264 T-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 398019 398025 6
Deletion Chr7 1171650 1171651 1
Deletion Chr7 1488366 1488380 14
Deletion Chr12 3792001 3802000 9999 OsKitaake12g052600
Deletion Chr2 4619450 4619453 3
Deletion Chr5 10477001 10534000 56999
Deletion Chr10 11303771 11303773 2
Deletion Chr5 11671001 11747000 75999 5
Deletion Chr7 13467318 13467320 2
Deletion Chr11 13620997 13621000 3
Deletion Chr11 13627337 13627339 2
Deletion Chr4 15621842 15621847 5
Deletion Chr8 15860456 15860471 15
Deletion Chr7 16374145 16374157 12
Deletion Chr3 16883535 16883541 6
Deletion Chr9 18161779 18161780 1
Deletion Chr1 18608121 18608127 6
Deletion Chr12 19326495 19326496 1
Deletion Chr5 20184663 20184664 1
Deletion Chr3 20187001 20403000 215999 4
Deletion Chr10 22467001 22662000 194999 27
Deletion Chr3 23707785 23707794 9
Deletion Chr4 23772548 23772560 12
Deletion Chr7 25416631 25416633 2
Deletion Chr6 25780244 25780258 14
Deletion Chr11 26190001 26460000 269999 40
Deletion Chr8 27026539 27026541 2
Deletion Chr4 27205106 27205118 12
Deletion Chr6 27728001 27769000 40999 4
Deletion Chr1 36152024 36152025 1 OsKitaake01g383600

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26568718 26568720 1 OsKitaake04g190800

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 425951 514395 OsKitaake07g005500
Inversion Chr7 425955 514398 OsKitaake07g005500
Inversion Chr10 16124574 16224556
Inversion Chr10 16124576 16901511
Inversion Chr10 22210186 22464212

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 14394290 Chr1 26784385
Translocation Chr10 16224556 Chr6 27725727
Translocation Chr10 22659051 Chr6 27728484 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6936158	A-T	Hetero	INTERGENIC
SBS	Chr1	8561802	G-A	Hetero	INTERGENIC
SBS	Chr1	16020129	A-C	Homo	INTERGENIC
SBS	Chr1	16988898	G-T	Homo	INTERGENIC
SBS	Chr1	23157199	C-T	Hetero	INTERGENIC
SBS	Chr1	35871648	C-G	Hetero	INTERGENIC
SBS	Chr1	37937180	C-T	Hetero	INTERGENIC
SBS	Chr2	2531287	G-A	Hetero	INTERGENIC
SBS	Chr2	9565557	A-C	Homo	INTERGENIC
SBS	Chr2	11887866	G-A	Hetero	INTERGENIC
SBS	Chr2	34813872	A-T	Hetero	INTERGENIC
SBS	Chr3	22537816	C-T	Hetero	INTERGENIC
SBS	Chr3	28109562	A-G	Hetero	INTRON
SBS	Chr3	31576293	A-G	Hetero	INTRON
SBS	Chr4	1249423	G-C	Hetero	INTRON
SBS	Chr4	14260429	C-G	Hetero	INTERGENIC
SBS	Chr4	15457278	C-G	Hetero	INTERGENIC
SBS	Chr5	22835641	T-C	Hetero	INTERGENIC
SBS	Chr6	16546815	A-C	Homo	INTERGENIC
SBS	Chr7	12468481	C-A	Homo	INTERGENIC
SBS	Chr7	15320370	A-G	Homo	INTERGENIC
SBS	Chr7	22354535	G-A	Hetero	INTERGENIC
SBS	Chr7	27605513	A-T	Hetero	INTERGENIC
SBS	Chr8	10662664	C-T	Hetero	INTERGENIC
SBS	Chr8	10877805	T-A	Hetero	INTRON
SBS	Chr8	11993688	C-T	Hetero	INTERGENIC
SBS	Chr8	22089336	C-T	Hetero	INTERGENIC
SBS	Chr10	7464449	A-C	Hetero	INTERGENIC
SBS	Chr10	9538073	A-G	Hetero	INTERGENIC
SBS	Chr10	16950635	G-A	Hetero	INTERGENIC
SBS	Chr10	23651172	G-A	Hetero	UTR_5_PRIME
SBS	Chr10	23909879	G-A	Hetero	INTRON
SBS	Chr11	3019447	C-T	Hetero	INTERGENIC
SBS	Chr11	13172108	C-A	Hetero	INTERGENIC
SBS	Chr11	27283831	G-A	Hetero	INTERGENIC
SBS	Chr12	13085814	T-A	Hetero	INTERGENIC
SBS	Chr12	14747264	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	398019	398025	6
Deletion	Chr7	1171650	1171651	1
Deletion	Chr7	1488366	1488380	14
Deletion	Chr12	3792001	3802000	9999	OsKitaake12g052600
Deletion	Chr2	4619450	4619453	3
Deletion	Chr5	10477001	10534000	56999
Deletion	Chr10	11303771	11303773	2
Deletion	Chr5	11671001	11747000	75999	5
Deletion	Chr7	13467318	13467320	2
Deletion	Chr11	13620997	13621000	3
Deletion	Chr11	13627337	13627339	2
Deletion	Chr4	15621842	15621847	5
Deletion	Chr8	15860456	15860471	15
Deletion	Chr7	16374145	16374157	12
Deletion	Chr3	16883535	16883541	6
Deletion	Chr9	18161779	18161780	1
Deletion	Chr1	18608121	18608127	6
Deletion	Chr12	19326495	19326496	1
Deletion	Chr5	20184663	20184664	1
Deletion	Chr3	20187001	20403000	215999	4
Deletion	Chr10	22467001	22662000	194999	27
Deletion	Chr3	23707785	23707794	9
Deletion	Chr4	23772548	23772560	12
Deletion	Chr7	25416631	25416633	2
Deletion	Chr6	25780244	25780258	14
Deletion	Chr11	26190001	26460000	269999	40
Deletion	Chr8	27026539	27026541	2
Deletion	Chr4	27205106	27205118	12
Deletion	Chr6	27728001	27769000	40999	4
Deletion	Chr1	36152024	36152025	1	OsKitaake01g383600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	425951	514395	OsKitaake07g005500
Inversion	Chr7	425955	514398	OsKitaake07g005500
Inversion	Chr10	16124574	16224556
Inversion	Chr10	16124576	16901511
Inversion	Chr10	22210186	22464212

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes