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Mutant Information

Mutant Name	FN3880-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3880-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 422150 T-G Hetero INTERGENIC
SBS Chr1 18486412 A-T Hetero INTERGENIC
SBS Chr1 18486414 A-G Hetero INTERGENIC
SBS Chr1 28168710 C-A Homo INTERGENIC
SBS Chr1 28168712 T-A Homo INTERGENIC
SBS Chr1 42437959 G-A Hetero INTERGENIC
SBS Chr2 9131576 C-T Homo INTERGENIC
SBS Chr2 9938990 A-C Homo INTERGENIC
SBS Chr2 35432103 T-A Homo INTERGENIC
SBS Chr3 20589356 G-A Hetero INTERGENIC
SBS Chr3 28936408 C-T Hetero INTERGENIC
SBS Chr3 28936414 A-T Hetero INTERGENIC
SBS Chr3 34760693 C-A Homo INTERGENIC
SBS Chr5 3748211 T-G Hetero INTRON
SBS Chr5 7991353 A-C Hetero INTERGENIC
SBS Chr5 26328330 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g232500
SBS Chr5 28261184 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g262500
SBS Chr6 23875785 T-C Hetero UTR_3_PRIME
SBS Chr6 28254490 T-A Hetero INTERGENIC
SBS Chr7 3628757 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g046200
SBS Chr7 4458471 A-C Hetero SPLICE_SITE_REGION
SBS Chr7 21177150 A-G Hetero INTERGENIC
SBS Chr7 25272946 A-T Hetero INTERGENIC
SBS Chr9 11769468 A-T Hetero INTERGENIC
SBS Chr10 6216317 T-C Hetero INTERGENIC
SBS Chr10 7499157 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g048700
SBS Chr10 13498565 G-C Hetero INTRON
SBS Chr10 13498567 A-T Hetero INTRON
SBS Chr10 21820183 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g175800
SBS Chr11 9219034 A-G Homo INTERGENIC
SBS Chr11 21559627 A-T Hetero INTERGENIC
SBS Chr11 28322738 C-T Hetero INTERGENIC
SBS Chr12 7253956 G-A Hetero INTRON
SBS Chr12 16409279 T-G Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 982669 982682 13
Deletion Chr4 3475095 3475096 1
Deletion Chr4 6401088 6401102 14
Deletion Chr1 6418572 6418573 1
Deletion Chr5 7588153 7588157 4
Deletion Chr1 9433719 9433724 5
Deletion Chr10 12234432 12234442 10
Deletion Chr6 12905831 12905834 3
Deletion Chr7 16322093 16322094 1
Deletion Chr10 16743241 16743243 2
Deletion Chr12 23386694 23386702 8
Deletion Chr8 24493174 24493176 2
Deletion Chr6 25695723 25695724 1
Deletion Chr7 28375993 28375997 4 OsKitaake07g269000
Deletion Chr1 30712968 30712977 9
Deletion Chr3 31230321 31230327 6 OsKitaake03g328600
Deletion Chr1 43819990 43819992 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 8267973 8267982 8

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 35932658 36521627 OsKitaake03g406000
Inversion Chr3 35932920 36339402

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 809957 Chr7 19263328
Translocation Chr12 814224 Chr7 19263336

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	422150	T-G	Hetero	INTERGENIC
SBS	Chr1	18486412	A-T	Hetero	INTERGENIC
SBS	Chr1	18486414	A-G	Hetero	INTERGENIC
SBS	Chr1	28168710	C-A	Homo	INTERGENIC
SBS	Chr1	28168712	T-A	Homo	INTERGENIC
SBS	Chr1	42437959	G-A	Hetero	INTERGENIC
SBS	Chr2	9131576	C-T	Homo	INTERGENIC
SBS	Chr2	9938990	A-C	Homo	INTERGENIC
SBS	Chr2	35432103	T-A	Homo	INTERGENIC
SBS	Chr3	20589356	G-A	Hetero	INTERGENIC
SBS	Chr3	28936408	C-T	Hetero	INTERGENIC
SBS	Chr3	28936414	A-T	Hetero	INTERGENIC
SBS	Chr3	34760693	C-A	Homo	INTERGENIC
SBS	Chr5	3748211	T-G	Hetero	INTRON
SBS	Chr5	7991353	A-C	Hetero	INTERGENIC
SBS	Chr5	26328330	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g232500
SBS	Chr5	28261184	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g262500
SBS	Chr6	23875785	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	28254490	T-A	Hetero	INTERGENIC
SBS	Chr7	3628757	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g046200
SBS	Chr7	4458471	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	21177150	A-G	Hetero	INTERGENIC
SBS	Chr7	25272946	A-T	Hetero	INTERGENIC
SBS	Chr9	11769468	A-T	Hetero	INTERGENIC
SBS	Chr10	6216317	T-C	Hetero	INTERGENIC
SBS	Chr10	7499157	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g048700
SBS	Chr10	13498565	G-C	Hetero	INTRON
SBS	Chr10	13498567	A-T	Hetero	INTRON
SBS	Chr10	21820183	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g175800
SBS	Chr11	9219034	A-G	Homo	INTERGENIC
SBS	Chr11	21559627	A-T	Hetero	INTERGENIC
SBS	Chr11	28322738	C-T	Hetero	INTERGENIC
SBS	Chr12	7253956	G-A	Hetero	INTRON
SBS	Chr12	16409279	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	982669	982682	13
Deletion	Chr4	3475095	3475096	1
Deletion	Chr4	6401088	6401102	14
Deletion	Chr1	6418572	6418573	1
Deletion	Chr5	7588153	7588157	4
Deletion	Chr1	9433719	9433724	5
Deletion	Chr10	12234432	12234442	10
Deletion	Chr6	12905831	12905834	3
Deletion	Chr7	16322093	16322094	1
Deletion	Chr10	16743241	16743243	2
Deletion	Chr12	23386694	23386702	8
Deletion	Chr8	24493174	24493176	2
Deletion	Chr6	25695723	25695724	1
Deletion	Chr7	28375993	28375997	4	OsKitaake07g269000
Deletion	Chr1	30712968	30712977	9
Deletion	Chr3	31230321	31230327	6	OsKitaake03g328600
Deletion	Chr1	43819990	43819992	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	35932658	36521627	OsKitaake03g406000
Inversion	Chr3	35932920	36339402

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes