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| Mutant Information |
|---|
| Mutant Name | FN3881-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3881-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25075645 | T-C | Homo | INTRON | |
| SBS | Chr1 | 28434372 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28514729 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 6170029 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 35597197 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2477838 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 36417631 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22743267 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29396669 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 29454882 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 4461562 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27622889 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6558145 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6558146 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 27515990 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 27515991 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 9665020 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 29049628 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 15264333 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17411459 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18517655 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 18761095 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19909880 | A-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 2199462 | 2199465 | 3 | |
| Deletion | Chr7 | 6834001 | 6888000 | 53999 | 2 |
| Deletion | Chr12 | 8376574 | 8376576 | 2 | OsKitaake12g086700 |
| Deletion | Chr10 | 8786954 | 8786961 | 7 | |
| Deletion | Chr9 | 14532383 | 14532384 | 1 | OsKitaake09g098800 |
| Deletion | Chr3 | 21543630 | 21543640 | 10 | |
| Deletion | Chr1 | 28055644 | 28055647 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 12736075 | 12736078 | 2 | |
| Insertion | Chr7 | 11985037 | 11985039 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 37452613 | 38113165 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 422490 | Chr1 | 37452616 | OsKitaake04g002900 |
| Translocation | Chr4 | 423059 | Chr1 | 38113228 | OsKitaake04g002900 |
| Translocation | Chr7 | 6834406 | Chr5 | 23184739 | OsKitaake07g078400 |
| Translocation | Chr9 | 9057884 | Chr6 | 3369357 | |
| Translocation | Chr9 | 9060185 | Chr6 | 3369354 |