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Mutant Information

Mutant Name	FN3883-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3883-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3850518 C-A Hetero INTERGENIC
SBS Chr1 5758644 C-A Hetero INTERGENIC
SBS Chr1 5758645 T-A Hetero INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr2 1745045 T-A Hetero INTERGENIC
SBS Chr2 3660238 G-A Hetero INTERGENIC
SBS Chr2 4831524 T-G Homo INTERGENIC
SBS Chr2 17929175 T-A Hetero INTERGENIC
SBS Chr2 18920774 A-G Hetero INTERGENIC
SBS Chr2 32554347 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 6500481 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 14792356 G-A Homo INTRON
SBS Chr3 18358102 G-T Homo INTERGENIC
SBS Chr3 27136759 G-A Hetero INTERGENIC
SBS Chr4 65279 G-C Homo UTR_3_PRIME
SBS Chr4 28165885 A-G Hetero INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr5 7103850 C-G Hetero INTERGENIC
SBS Chr6 10400591 A-G Homo INTERGENIC
SBS Chr6 20317060 G-A Homo INTRON
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 8342784 A-G Hetero INTERGENIC
SBS Chr7 25279076 G-T Homo INTERGENIC
SBS Chr8 4437890 T-G Homo INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr9 8327061 G-C Hetero INTERGENIC
SBS Chr10 213646 T-G Hetero INTERGENIC
SBS Chr10 1522444 T-A Hetero INTERGENIC
SBS Chr10 1522447 G-A Hetero INTERGENIC
SBS Chr10 16822153 A-C Hetero INTERGENIC
SBS Chr12 8119841 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 11431001 11466000 34999 2
Deletion Chr3 13233319 13233323 4
Deletion Chr1 16451203 16451210 7
Deletion Chr5 16714932 16714947 15
Deletion Chr10 17589635 17589647 12
Deletion Chr2 18674122 18674146 24
Deletion Chr5 19374547 19374548 1
Deletion Chr6 20322905 20322908 3 OsKitaake06g181500
Deletion Chr3 23744128 23744131 3
Deletion Chr11 28876538 28876544 6 OsKitaake11g236500

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2904591 2904594 2
Insertion Chr3 2472333 2472336 2
Insertion Chr5 176980 176984 3
Insertion Chr7 1635343 1635346 2
Insertion Chr7 29129197 29129201 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 17272417 Chr1 44100633
Translocation Chr2 17273868 Chr1 44100638

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3850518	C-A	Hetero	INTERGENIC
SBS	Chr1	5758644	C-A	Hetero	INTERGENIC
SBS	Chr1	5758645	T-A	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr2	1745045	T-A	Hetero	INTERGENIC
SBS	Chr2	3660238	G-A	Hetero	INTERGENIC
SBS	Chr2	4831524	T-G	Homo	INTERGENIC
SBS	Chr2	17929175	T-A	Hetero	INTERGENIC
SBS	Chr2	18920774	A-G	Hetero	INTERGENIC
SBS	Chr2	32554347	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	6500481	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	14792356	G-A	Homo	INTRON
SBS	Chr3	18358102	G-T	Homo	INTERGENIC
SBS	Chr3	27136759	G-A	Hetero	INTERGENIC
SBS	Chr4	65279	G-C	Homo	UTR_3_PRIME
SBS	Chr4	28165885	A-G	Hetero	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr5	7103850	C-G	Hetero	INTERGENIC
SBS	Chr6	10400591	A-G	Homo	INTERGENIC
SBS	Chr6	20317060	G-A	Homo	INTRON
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	8342784	A-G	Hetero	INTERGENIC
SBS	Chr7	25279076	G-T	Homo	INTERGENIC
SBS	Chr8	4437890	T-G	Homo	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr9	8327061	G-C	Hetero	INTERGENIC
SBS	Chr10	213646	T-G	Hetero	INTERGENIC
SBS	Chr10	1522444	T-A	Hetero	INTERGENIC
SBS	Chr10	1522447	G-A	Hetero	INTERGENIC
SBS	Chr10	16822153	A-C	Hetero	INTERGENIC
SBS	Chr12	8119841	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	11431001	11466000	34999	2
Deletion	Chr3	13233319	13233323	4
Deletion	Chr1	16451203	16451210	7
Deletion	Chr5	16714932	16714947	15
Deletion	Chr10	17589635	17589647	12
Deletion	Chr2	18674122	18674146	24
Deletion	Chr5	19374547	19374548	1
Deletion	Chr6	20322905	20322908	3	OsKitaake06g181500
Deletion	Chr3	23744128	23744131	3
Deletion	Chr11	28876538	28876544	6	OsKitaake11g236500

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	17272417	Chr1	44100633
Translocation	Chr2	17273868	Chr1	44100638

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes