Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3885-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3885-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12844032 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 13643596 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 15700493 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23854605 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g228800 |
| SBS | Chr1 | 35120951 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37157152 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37371251 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 8918789 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 19386774 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25043453 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8700601 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g119100 |
| SBS | Chr3 | 23910216 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 25358362 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26188162 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27269223 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 76204 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g000700 |
| SBS | Chr5 | 22225243 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 22950662 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 29905367 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 1182587 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 27470417 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5076228 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 5076229 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 15020162 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17777529 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9519902 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 16688964 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 3101132 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 6964995 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 946583 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 6410751 | C-T | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 167021 | 167035 | 14 | |
| Deletion | Chr11 | 342553 | 342568 | 15 | |
| Deletion | Chr1 | 696460 | 696464 | 4 | |
| Deletion | Chr4 | 1219060 | 1219063 | 3 | |
| Deletion | Chr6 | 1226133 | 1226146 | 13 | |
| Deletion | Chr10 | 2147104 | 2147105 | 1 | |
| Deletion | Chr9 | 4445901 | 4445903 | 2 | |
| Deletion | Chr2 | 6516846 | 6516849 | 3 | |
| Deletion | Chr3 | 7163978 | 7163979 | 1 | |
| Deletion | Chr7 | 9921403 | 9921408 | 5 | |
| Deletion | Chr1 | 10626010 | 10626021 | 11 | |
| Deletion | Chr4 | 11692186 | 11692189 | 3 | |
| Deletion | Chr5 | 11926261 | 11926263 | 2 | |
| Deletion | Chr3 | 12017232 | 12017233 | 1 | OsKitaake03g163400 |
| Deletion | Chr4 | 12916525 | 12916538 | 13 | |
| Deletion | Chr4 | 13753127 | 13753130 | 3 | |
| Deletion | Chr4 | 26767776 | 26767791 | 15 | |
| Deletion | Chr11 | 29358648 | 29358649 | 1 | |
| Deletion | Chr2 | 35201113 | 35201117 | 4 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 10651786 | 10651788 | 1 | |
| Insertion | Chr3 | 33634317 | 33634320 | 2 | |
| Insertion | Chr8 | 8802213 | 8802216 | 2 | OsKitaake08g080800  |
| Insertion | Chr11 | 11247494 | 11247519 | 24 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 12882672 | 13642682 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 21615359 | Chr5 | 13581441 | OsKitaake05g105100 |