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| Mutant Information |
|---|
| Mutant Name | FN3886-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3886-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22507603 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 24508964 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g236100 |
| SBS | Chr2 | 10289208 | T-C | Homo | INTRON | |
| SBS | Chr2 | 17285921 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 3547322 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16385826 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26590082 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g277200 |
| SBS | Chr3 | 31145641 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 8910679 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 13064703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21110391 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29022053 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g219100 |
| SBS | Chr5 | 4916012 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9592623 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 24161028 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 7761468 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 26330657 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6564610 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 25433344 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 27964390 | T-C | Homo | INTRON | |
| SBS | Chr10 | 4741470 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 89236 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 17495158 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20427906 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g159800 |
| SBS | Chr11 | 24478396 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 17328595 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g127400 |
| SBS | Chr12 | 17328607 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g127400 |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 892159 | 892164 | 5 | |
| Deletion | Chr4 | 8582678 | 8582686 | 8 | |
| Deletion | Chr5 | 15424171 | 15424173 | 2 | OsKitaake05g118300 |
| Deletion | Chr1 | 16384418 | 16384433 | 15 | |
| Deletion | Chr11 | 18895699 | 18895715 | 16 | |
| Deletion | Chr6 | 21126923 | 21126932 | 9 | |
| Deletion | Chr6 | 25398748 | 25398749 | 1 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 24907702 | 24907705 | 2 | |
| Insertion | Chr4 | 24165860 | 24165865 | 4 | |
| Insertion | Chr5 | 1341481 | 1341484 | 2 | |
| Insertion | Chr7 | 27420426 | 27420429 | 2 | |
| Insertion | Chr8 | 18669453 | 18669457 | 3 | |
| Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635  |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 5307230 | 5497469 | OsKitaake06g073400 |
| Inversion | Chr6 | 5307240 | 5497481 | OsKitaake06g073400 |
| Inversion | Chr3 | 15850870 | 16390513 | OsKitaake03g207900 |
| Inversion | Chr3 | 15850902 | 16391854 | OsKitaake03g207900 |
| Inversion | Chr3 | 18649658 | 18848432 | OsKitaake03g225400 |
| Inversion | Chr3 | 18649666 | 18848436 | OsKitaake03g225400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6583053 | Chr5 | 21664043 | OsKitaake05g176600 |
| Translocation | Chr7 | 6583594 | Chr5 | 21664044 | OsKitaake05g176600 |
| Translocation | Chr10 | 9177653 | Chr3 | 19258033 |