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Mutant Information

Mutant Name	FN3887-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3887-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29413234 A-G Hetero INTERGENIC
SBS Chr1 32585923 T-C Hetero INTERGENIC
SBS Chr2 9683132 C-T Hetero INTERGENIC
SBS Chr2 14412686 G-A Hetero INTERGENIC
SBS Chr2 17157288 T-C Hetero INTERGENIC
SBS Chr2 18670660 G-A Hetero INTERGENIC
SBS Chr2 18814235 C-T Hetero INTERGENIC
SBS Chr3 3732048 C-A Homo INTERGENIC
SBS Chr3 10305328 T-C Hetero INTERGENIC
SBS Chr3 17660992 C-T Hetero INTERGENIC
SBS Chr4 5259037 G-A Homo INTERGENIC
SBS Chr4 11393404 G-T Hetero INTERGENIC
SBS Chr4 13229078 C-T Hetero INTRON
SBS Chr5 2228480 A-G Hetero INTERGENIC
SBS Chr5 24201758 G-A Hetero INTRON
SBS Chr5 24616826 T-A Hetero INTERGENIC
SBS Chr5 24616827 A-G Hetero INTERGENIC
SBS Chr6 1142516 G-A Hetero INTERGENIC
SBS Chr6 3201908 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g044800
SBS Chr6 17778597 G-A Hetero INTERGENIC
SBS Chr7 2843809 T-A Hetero INTERGENIC
SBS Chr7 7167490 A-G Hetero INTERGENIC
SBS Chr7 11798714 A-G Hetero INTERGENIC
SBS Chr7 12032994 C-A Hetero INTERGENIC
SBS Chr7 24710175 C-T Hetero INTERGENIC
SBS Chr7 25958313 A-G Hetero INTERGENIC
SBS Chr8 3970965 G-A Hetero INTERGENIC
SBS Chr8 4177987 T-A Hetero INTERGENIC
SBS Chr8 8238736 C-T Homo INTERGENIC
SBS Chr8 28856290 G-T Hetero INTERGENIC
SBS Chr9 12553882 C-A Hetero INTERGENIC
SBS Chr9 12553883 C-T Hetero INTERGENIC
SBS Chr9 21788713 G-A Homo INTERGENIC
SBS Chr10 2274971 C-T Hetero INTERGENIC
SBS Chr10 21560070 G-A Hetero INTERGENIC
SBS Chr11 5709556 C-T Homo INTRON
SBS Chr11 11947006 T-C Hetero INTERGENIC
SBS Chr12 4087971 A-G Homo INTERGENIC
SBS Chr12 18766028 C-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 965079 965080 1
Deletion Chr6 1382700 1382729 29 OsKitaake06g015300
Deletion Chr8 1440863 1440865 2
Deletion Chr2 3815750 3815753 3
Deletion Chr7 4460707 4460711 4
Deletion Chr3 5913299 5913305 6 OsKitaake03g084000
Deletion Chr8 6482659 6482660 1
Deletion Chr6 11487603 11487605 2
Deletion Chr2 12386790 12386792 2
Deletion Chr5 14865832 14865837 5
Deletion Chr7 15456376 15456377 1
Deletion Chr11 15500827 15500845 18
Deletion Chr5 24773899 24773900 1
Deletion Chr5 25682438 25682439 1
Deletion Chr8 27356284 27356288 4
Deletion Chr5 27767776 27767783 7
Deletion Chr2 27863001 27885000 21999 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9601603 9601606 2
Insertion Chr4 4854931 4854934 2
Insertion Chr5 29461455 29461458 2
Insertion Chr5 29899713 29899717 3
Insertion Chr7 2768573 2768576 2
Insertion Chr7 6369567 6369570 2
Insertion Chr7 27533966 27533969 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 26426330 Chr5 25676357 OsKitaake05g225300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29413234	A-G	Hetero	INTERGENIC
SBS	Chr1	32585923	T-C	Hetero	INTERGENIC
SBS	Chr2	9683132	C-T	Hetero	INTERGENIC
SBS	Chr2	14412686	G-A	Hetero	INTERGENIC
SBS	Chr2	17157288	T-C	Hetero	INTERGENIC
SBS	Chr2	18670660	G-A	Hetero	INTERGENIC
SBS	Chr2	18814235	C-T	Hetero	INTERGENIC
SBS	Chr3	3732048	C-A	Homo	INTERGENIC
SBS	Chr3	10305328	T-C	Hetero	INTERGENIC
SBS	Chr3	17660992	C-T	Hetero	INTERGENIC
SBS	Chr4	5259037	G-A	Homo	INTERGENIC
SBS	Chr4	11393404	G-T	Hetero	INTERGENIC
SBS	Chr4	13229078	C-T	Hetero	INTRON
SBS	Chr5	2228480	A-G	Hetero	INTERGENIC
SBS	Chr5	24201758	G-A	Hetero	INTRON
SBS	Chr5	24616826	T-A	Hetero	INTERGENIC
SBS	Chr5	24616827	A-G	Hetero	INTERGENIC
SBS	Chr6	1142516	G-A	Hetero	INTERGENIC
SBS	Chr6	3201908	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g044800
SBS	Chr6	17778597	G-A	Hetero	INTERGENIC
SBS	Chr7	2843809	T-A	Hetero	INTERGENIC
SBS	Chr7	7167490	A-G	Hetero	INTERGENIC
SBS	Chr7	11798714	A-G	Hetero	INTERGENIC
SBS	Chr7	12032994	C-A	Hetero	INTERGENIC
SBS	Chr7	24710175	C-T	Hetero	INTERGENIC
SBS	Chr7	25958313	A-G	Hetero	INTERGENIC
SBS	Chr8	3970965	G-A	Hetero	INTERGENIC
SBS	Chr8	4177987	T-A	Hetero	INTERGENIC
SBS	Chr8	8238736	C-T	Homo	INTERGENIC
SBS	Chr8	28856290	G-T	Hetero	INTERGENIC
SBS	Chr9	12553882	C-A	Hetero	INTERGENIC
SBS	Chr9	12553883	C-T	Hetero	INTERGENIC
SBS	Chr9	21788713	G-A	Homo	INTERGENIC
SBS	Chr10	2274971	C-T	Hetero	INTERGENIC
SBS	Chr10	21560070	G-A	Hetero	INTERGENIC
SBS	Chr11	5709556	C-T	Homo	INTRON
SBS	Chr11	11947006	T-C	Hetero	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC
SBS	Chr12	18766028	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	965079	965080	1
Deletion	Chr6	1382700	1382729	29	OsKitaake06g015300
Deletion	Chr8	1440863	1440865	2
Deletion	Chr2	3815750	3815753	3
Deletion	Chr7	4460707	4460711	4
Deletion	Chr3	5913299	5913305	6	OsKitaake03g084000
Deletion	Chr8	6482659	6482660	1
Deletion	Chr6	11487603	11487605	2
Deletion	Chr2	12386790	12386792	2
Deletion	Chr5	14865832	14865837	5
Deletion	Chr7	15456376	15456377	1
Deletion	Chr11	15500827	15500845	18
Deletion	Chr5	24773899	24773900	1
Deletion	Chr5	25682438	25682439	1
Deletion	Chr8	27356284	27356288	4
Deletion	Chr5	27767776	27767783	7
Deletion	Chr2	27863001	27885000	21999	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	26426330	Chr5	25676357	OsKitaake05g225300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes