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Mutant Information

Mutant Name	FN3888-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3888-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 15

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13304638 C-A Hetero INTERGENIC
SBS Chr2 23318243 G-A Hetero INTERGENIC
SBS Chr2 32378380 C-A Hetero UTR_3_PRIME
SBS Chr3 7422421 C-T Homo INTERGENIC
SBS Chr3 29206538 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g303800
SBS Chr4 10131231 C-T Hetero INTERGENIC
SBS Chr4 13323857 G-A Hetero INTERGENIC
SBS Chr4 23810136 T-A Homo INTERGENIC
SBS Chr5 12373136 C-G Hetero INTERGENIC
SBS Chr6 2957365 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g040600
SBS Chr8 27956749 C-T Hetero INTERGENIC
SBS Chr8 28988690 A-T Hetero INTERGENIC
SBS Chr9 19675755 C-G Homo INTRON
SBS Chr9 22124573 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g199100
SBS Chr10 8537033 G-A Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1165395 1165397 2
Deletion Chr10 1271406 1271420 14
Deletion Chr9 1537927 1537938 11
Deletion Chr11 1709746 1709751 5
Deletion Chr4 3580640 3580642 2
Deletion Chr7 5245143 5245144 1
Deletion Chr8 5678724 5678726 2
Deletion Chr8 6472360 6472375 15
Deletion Chr9 6799815 6799817 2
Deletion Chr11 7622775 7622781 6
Deletion Chr10 7895807 7895818 11
Deletion Chr10 8956958 8956977 19
Deletion Chr1 14745002 14745003 1
Deletion Chr7 18478277 18478304 27
Deletion Chr7 19359354 19359359 5
Deletion Chr3 20451129 20451133 4
Deletion Chr3 21311409 21311411 2
Deletion Chr12 21450896 21450905 9
Deletion Chr8 21752853 21752855 2
Deletion Chr6 22485303 22485308 5
Deletion Chr5 25631860 25631868 8
Deletion Chr1 27011724 27011732 8
Deletion Chr2 31136716 31136721 5
Deletion Chr2 31838465 31838478 13
Deletion Chr1 37321581 37321582 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39234058 39234061 2
Insertion Chr6 26228257 26228261 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2318623 2762126
Inversion Chr5 2321050 2762128

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8151984 Chr4 34175863 OsKitaake04g284945

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13304638	C-A	Hetero	INTERGENIC
SBS	Chr2	23318243	G-A	Hetero	INTERGENIC
SBS	Chr2	32378380	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	7422421	C-T	Homo	INTERGENIC
SBS	Chr3	29206538	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g303800
SBS	Chr4	10131231	C-T	Hetero	INTERGENIC
SBS	Chr4	13323857	G-A	Hetero	INTERGENIC
SBS	Chr4	23810136	T-A	Homo	INTERGENIC
SBS	Chr5	12373136	C-G	Hetero	INTERGENIC
SBS	Chr6	2957365	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g040600
SBS	Chr8	27956749	C-T	Hetero	INTERGENIC
SBS	Chr8	28988690	A-T	Hetero	INTERGENIC
SBS	Chr9	19675755	C-G	Homo	INTRON
SBS	Chr9	22124573	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g199100
SBS	Chr10	8537033	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1165395	1165397	2
Deletion	Chr10	1271406	1271420	14
Deletion	Chr9	1537927	1537938	11
Deletion	Chr11	1709746	1709751	5
Deletion	Chr4	3580640	3580642	2
Deletion	Chr7	5245143	5245144	1
Deletion	Chr8	5678724	5678726	2
Deletion	Chr8	6472360	6472375	15
Deletion	Chr9	6799815	6799817	2
Deletion	Chr11	7622775	7622781	6
Deletion	Chr10	7895807	7895818	11
Deletion	Chr10	8956958	8956977	19
Deletion	Chr1	14745002	14745003	1
Deletion	Chr7	18478277	18478304	27
Deletion	Chr7	19359354	19359359	5
Deletion	Chr3	20451129	20451133	4
Deletion	Chr3	21311409	21311411	2
Deletion	Chr12	21450896	21450905	9
Deletion	Chr8	21752853	21752855	2
Deletion	Chr6	22485303	22485308	5
Deletion	Chr5	25631860	25631868	8
Deletion	Chr1	27011724	27011732	8
Deletion	Chr2	31136716	31136721	5
Deletion	Chr2	31838465	31838478	13
Deletion	Chr1	37321581	37321582	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2318623	2762126
Inversion	Chr5	2321050	2762128

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes