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Mutant Information

Mutant Name	FN3889-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3889-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 7533595 T-C Homo INTRON
SBS Chr1 7643486 G-T Homo SYNONYMOUS_CODING
SBS Chr1 9779521 C-T Homo INTRON
SBS Chr1 34472966 A-G Hetero UTR_3_PRIME
SBS Chr2 322212 C-T Hetero UTR_3_PRIME
SBS Chr2 2401907 G-T Hetero INTERGENIC
SBS Chr2 19071665 C-T Homo INTERGENIC
SBS Chr3 497376 C-T Hetero INTERGENIC
SBS Chr3 17978907 G-A Hetero UTR_5_PRIME
SBS Chr3 22070501 A-G Hetero INTERGENIC
SBS Chr4 9226253 C-T Homo INTERGENIC
SBS Chr4 9879484 T-C Hetero INTERGENIC
SBS Chr4 34542021 A-T Hetero UTR_5_PRIME
SBS Chr5 11779250 G-A Homo INTERGENIC
SBS Chr5 15498418 A-G Hetero INTERGENIC
SBS Chr5 19634815 G-A Hetero INTERGENIC
SBS Chr5 23638953 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g206700
SBS Chr5 27921676 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g256800
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 7382265 C-T Hetero INTERGENIC
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 14597438 G-T Hetero INTERGENIC
SBS Chr8 21305130 C-T Hetero INTRON
SBS Chr8 21348657 T-A Hetero STOP_GAINED OsKitaake08g160100
SBS Chr10 13191407 C-T Homo INTERGENIC
SBS Chr10 14611439 A-G Hetero INTERGENIC
SBS Chr10 19633023 T-C Hetero INTRON
SBS Chr11 16088991 C-T Homo INTERGENIC
SBS Chr11 25589321 A-T Hetero UTR_3_PRIME
SBS Chr11 25686093 G-A Hetero INTERGENIC
SBS Chr11 28383162 G-A Hetero INTERGENIC
SBS Chr12 9952575 T-C Hetero INTERGENIC
SBS Chr12 10172962 G-A Hetero INTERGENIC
SBS Chr12 12380389 A-T Hetero INTERGENIC
SBS Chr12 12773681 A-T Hetero INTRON
SBS Chr12 24322553 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7105 7456 351
Deletion Chr12 266756 266759 3 OsKitaake12g002901
Deletion Chr8 1157407 1157409 2 OsKitaake08g015300
Deletion Chr1 7643614 7643619 5 OsKitaake01g096000
Deletion Chr1 8051691 8051695 4
Deletion Chr11 8262041 8262048 7
Deletion Chr1 9344679 9344695 16
Deletion Chr4 10507868 10507870 2
Deletion Chr5 13318626 13318629 3
Deletion Chr11 13806342 13806351 9
Deletion Chr6 15944060 15944068 8
Deletion Chr12 18585154 18585160 6
Deletion Chr5 23695283 23695285 2
Deletion Chr12 24959017 24959018 1
Deletion Chr5 25299891 25299893 2
Deletion Chr1 27370285 27370286 1
Deletion Chr2 28314700 28314702 2
Deletion Chr2 33364741 33364742 1
Deletion Chr2 35764751 35764752 1
Deletion Chr3 35813274 35813275 1 OsKitaake03g394250

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 26091602 26091605 2
Insertion Chr9 10002263 10002266 2
Insertion Chr6 11200865 11200886 20

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 13331565 13608011
Inversion Chr6 13331568 13608061

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 15421089 Chr2 972891
Translocation Chr7 15421098 Chr2 972507

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	7533595	T-C	Homo	INTRON
SBS	Chr1	7643486	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	9779521	C-T	Homo	INTRON
SBS	Chr1	34472966	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	322212	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	2401907	G-T	Hetero	INTERGENIC
SBS	Chr2	19071665	C-T	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Hetero	INTERGENIC
SBS	Chr3	17978907	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	22070501	A-G	Hetero	INTERGENIC
SBS	Chr4	9226253	C-T	Homo	INTERGENIC
SBS	Chr4	9879484	T-C	Hetero	INTERGENIC
SBS	Chr4	34542021	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	11779250	G-A	Homo	INTERGENIC
SBS	Chr5	15498418	A-G	Hetero	INTERGENIC
SBS	Chr5	19634815	G-A	Hetero	INTERGENIC
SBS	Chr5	23638953	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g206700
SBS	Chr5	27921676	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g256800
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	7382265	C-T	Hetero	INTERGENIC
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	14597438	G-T	Hetero	INTERGENIC
SBS	Chr8	21305130	C-T	Hetero	INTRON
SBS	Chr8	21348657	T-A	Hetero	STOP_GAINED	OsKitaake08g160100
SBS	Chr10	13191407	C-T	Homo	INTERGENIC
SBS	Chr10	14611439	A-G	Hetero	INTERGENIC
SBS	Chr10	19633023	T-C	Hetero	INTRON
SBS	Chr11	16088991	C-T	Homo	INTERGENIC
SBS	Chr11	25589321	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	25686093	G-A	Hetero	INTERGENIC
SBS	Chr11	28383162	G-A	Hetero	INTERGENIC
SBS	Chr12	9952575	T-C	Hetero	INTERGENIC
SBS	Chr12	10172962	G-A	Hetero	INTERGENIC
SBS	Chr12	12380389	A-T	Hetero	INTERGENIC
SBS	Chr12	12773681	A-T	Hetero	INTRON
SBS	Chr12	24322553	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7105	7456	351
Deletion	Chr12	266756	266759	3	OsKitaake12g002901
Deletion	Chr8	1157407	1157409	2	OsKitaake08g015300
Deletion	Chr1	7643614	7643619	5	OsKitaake01g096000
Deletion	Chr1	8051691	8051695	4
Deletion	Chr11	8262041	8262048	7
Deletion	Chr1	9344679	9344695	16
Deletion	Chr4	10507868	10507870	2
Deletion	Chr5	13318626	13318629	3
Deletion	Chr11	13806342	13806351	9
Deletion	Chr6	15944060	15944068	8
Deletion	Chr12	18585154	18585160	6
Deletion	Chr5	23695283	23695285	2
Deletion	Chr12	24959017	24959018	1
Deletion	Chr5	25299891	25299893	2
Deletion	Chr1	27370285	27370286	1
Deletion	Chr2	28314700	28314702	2
Deletion	Chr2	33364741	33364742	1
Deletion	Chr2	35764751	35764752	1
Deletion	Chr3	35813274	35813275	1	OsKitaake03g394250

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13331565	13608011
Inversion	Chr6	13331568	13608061

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes