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Mutant Information

Mutant Name	FN3890-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3890-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13809367 C-T Hetero INTERGENIC
SBS Chr1 29378704 T-C Homo UTR_3_PRIME
SBS Chr2 8521028 C-T Homo INTERGENIC
SBS Chr2 21311185 T-C Homo INTERGENIC
SBS Chr3 15260041 G-C Hetero INTERGENIC
SBS Chr3 24203613 T-C Hetero INTERGENIC
SBS Chr4 10431386 C-T Hetero INTERGENIC
SBS Chr4 10981959 G-A Homo INTERGENIC
SBS Chr4 16517238 C-T Hetero INTERGENIC
SBS Chr4 16892321 C-A Homo INTERGENIC
SBS Chr4 23585573 G-A Hetero INTERGENIC
SBS Chr4 33035088 A-T Hetero INTERGENIC
SBS Chr4 34840239 C-A Hetero INTERGENIC
SBS Chr5 3726637 T-C Hetero INTERGENIC
SBS Chr5 3771331 G-A Hetero INTRON
SBS Chr5 8693337 C-T Homo INTERGENIC
SBS Chr5 16301594 G-A Homo INTERGENIC
SBS Chr5 18211270 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g141800
SBS Chr6 5881367 T-C Hetero INTERGENIC
SBS Chr7 1963655 G-A Homo INTERGENIC
SBS Chr7 24913608 G-A Homo INTERGENIC
SBS Chr8 16271673 T-A Homo INTRON
SBS Chr8 27712304 C-T Homo INTERGENIC
SBS Chr9 8397050 C-T Homo INTERGENIC
SBS Chr9 11097387 A-G Hetero INTERGENIC
SBS Chr9 11396485 C-T Hetero INTERGENIC
SBS Chr9 14676437 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g100400
SBS Chr10 5646391 T-C Hetero INTERGENIC
SBS Chr10 17685311 C-T Homo INTERGENIC
SBS Chr11 2398631 C-G Homo INTERGENIC
SBS Chr11 10944488 A-C Hetero INTERGENIC
SBS Chr11 11736782 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr11 15643416 A-G Hetero INTERGENIC
SBS Chr11 15680135 A-G Hetero INTERGENIC
SBS Chr11 15766914 G-T Hetero INTERGENIC
SBS Chr11 16221392 G-A Hetero INTRON
SBS Chr11 16230898 G-C Hetero INTERGENIC
SBS Chr11 18522229 G-A Hetero INTERGENIC
SBS Chr12 4204658 C-T Homo INTERGENIC
SBS Chr12 4254002 C-T Hetero INTERGENIC
SBS Chr12 11608614 C-T Homo INTERGENIC
SBS Chr12 13033578 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 200581 200593 12
Deletion Chr7 1479833 1479850 17
Deletion Chr12 4204903 4204904 1
Deletion Chr12 4207453 4207459 6
Deletion Chr12 4317743 4317744 1
Deletion Chr8 9631416 9631421 5
Deletion Chr6 9817207 9817208 1
Deletion Chr11 10449001 10528000 78999 5
Deletion Chr11 10535001 10593000 57999 4
Deletion Chr6 11211958 11211988 30
Deletion Chr9 11325246 11325248 2
Deletion Chr9 11712001 11889000 176999 11
Deletion Chr3 13532055 13532057 2
Deletion Chr7 13895727 13895742 15
Deletion Chr8 14470421 14470442 21
Deletion Chr11 19346202 19346203 1
Deletion Chr7 20021647 20021649 2
Deletion Chr7 24629193 24629197 4
Deletion Chr7 25555440 25555441 1
Deletion Chr7 25659470 25659474 4 OsKitaake07g233800
Deletion Chr11 29424098 29424100 2
Deletion Chr1 38812883 38812884 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7488299 7488302 2
Insertion Chr4 21760321 21760325 3
Insertion Chr5 3251672 3251678 5
Insertion Chr7 20803850 20803855 4
Insertion Chr10 3785395 3785398 2
Insertion Chr11 11923023 11923029 5
Insertion Chr11 15619678 15619692 13 OsKitaake11g125600
Insertion Chr10 23539482 23539487 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10429917 10599180
Inversion Chr11 10429936 10599186
Inversion Chr10 11269359 11320918 OsKitaake10g066700
Inversion Chr10 11269364 11320923 OsKitaake10g066700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9680872 Chr9 11717225
Translocation Chr12 9681191 Chr9 11887805
Translocation Chr12 9770315 Chr5 7207077
Translocation Chr12 9771167 Chr5 7207075
Translocation Chr9 11880021 Chr6 23556543 OsKitaake06g207803

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13809367	C-T	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Homo	UTR_3_PRIME
SBS	Chr2	8521028	C-T	Homo	INTERGENIC
SBS	Chr2	21311185	T-C	Homo	INTERGENIC
SBS	Chr3	15260041	G-C	Hetero	INTERGENIC
SBS	Chr3	24203613	T-C	Hetero	INTERGENIC
SBS	Chr4	10431386	C-T	Hetero	INTERGENIC
SBS	Chr4	10981959	G-A	Homo	INTERGENIC
SBS	Chr4	16517238	C-T	Hetero	INTERGENIC
SBS	Chr4	16892321	C-A	Homo	INTERGENIC
SBS	Chr4	23585573	G-A	Hetero	INTERGENIC
SBS	Chr4	33035088	A-T	Hetero	INTERGENIC
SBS	Chr4	34840239	C-A	Hetero	INTERGENIC
SBS	Chr5	3726637	T-C	Hetero	INTERGENIC
SBS	Chr5	3771331	G-A	Hetero	INTRON
SBS	Chr5	8693337	C-T	Homo	INTERGENIC
SBS	Chr5	16301594	G-A	Homo	INTERGENIC
SBS	Chr5	18211270	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g141800
SBS	Chr6	5881367	T-C	Hetero	INTERGENIC
SBS	Chr7	1963655	G-A	Homo	INTERGENIC
SBS	Chr7	24913608	G-A	Homo	INTERGENIC
SBS	Chr8	16271673	T-A	Homo	INTRON
SBS	Chr8	27712304	C-T	Homo	INTERGENIC
SBS	Chr9	8397050	C-T	Homo	INTERGENIC
SBS	Chr9	11097387	A-G	Hetero	INTERGENIC
SBS	Chr9	11396485	C-T	Hetero	INTERGENIC
SBS	Chr9	14676437	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g100400
SBS	Chr10	5646391	T-C	Hetero	INTERGENIC
SBS	Chr10	17685311	C-T	Homo	INTERGENIC
SBS	Chr11	2398631	C-G	Homo	INTERGENIC
SBS	Chr11	10944488	A-C	Hetero	INTERGENIC
SBS	Chr11	11736782	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr11	15643416	A-G	Hetero	INTERGENIC
SBS	Chr11	15680135	A-G	Hetero	INTERGENIC
SBS	Chr11	15766914	G-T	Hetero	INTERGENIC
SBS	Chr11	16221392	G-A	Hetero	INTRON
SBS	Chr11	16230898	G-C	Hetero	INTERGENIC
SBS	Chr11	18522229	G-A	Hetero	INTERGENIC
SBS	Chr12	4204658	C-T	Homo	INTERGENIC
SBS	Chr12	4254002	C-T	Hetero	INTERGENIC
SBS	Chr12	11608614	C-T	Homo	INTERGENIC
SBS	Chr12	13033578	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	200581	200593	12
Deletion	Chr7	1479833	1479850	17
Deletion	Chr12	4204903	4204904	1
Deletion	Chr12	4207453	4207459	6
Deletion	Chr12	4317743	4317744	1
Deletion	Chr8	9631416	9631421	5
Deletion	Chr6	9817207	9817208	1
Deletion	Chr11	10449001	10528000	78999	5
Deletion	Chr11	10535001	10593000	57999	4
Deletion	Chr6	11211958	11211988	30
Deletion	Chr9	11325246	11325248	2
Deletion	Chr9	11712001	11889000	176999	11
Deletion	Chr3	13532055	13532057	2
Deletion	Chr7	13895727	13895742	15
Deletion	Chr8	14470421	14470442	21
Deletion	Chr11	19346202	19346203	1
Deletion	Chr7	20021647	20021649	2
Deletion	Chr7	24629193	24629197	4
Deletion	Chr7	25555440	25555441	1
Deletion	Chr7	25659470	25659474	4	OsKitaake07g233800
Deletion	Chr11	29424098	29424100	2
Deletion	Chr1	38812883	38812884	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10429917	10599180
Inversion	Chr11	10429936	10599186
Inversion	Chr10	11269359	11320918	OsKitaake10g066700
Inversion	Chr10	11269364	11320923	OsKitaake10g066700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes