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| Mutant Information |
|---|
| Mutant Name | FN3892-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3892-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 17104734 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 10465317 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10465318 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16876349 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26877371 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 32703580 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 1606536 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 27210809 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15878036 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr6 | 13158200 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13158201 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17221468 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24251916 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30276481 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 124254 | C-G | Hetero | INTRON | |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20547058 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23343867 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18388432 | A-T | Homo | INTRON | |
| SBS | Chr9 | 2960861 | T-G | Homo | INTRON | |
| SBS | Chr9 | 2963713 | G-A | Homo | INTRON | |
| SBS | Chr9 | 14297599 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6035930 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6167727 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 6471967 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8013861 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 17453369 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g119000 |
| SBS | Chr10 | 19523041 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 13065258 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5694563 | A-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3962480 | 3962481 | 1 | |
| Deletion | Chr11 | 5785064 | 5785066 | 2 | |
| Deletion | Chr6 | 11114001 | 11153000 | 38999 | 5 |
| Deletion | Chr6 | 13552149 | 13552151 | 2 | OsKitaake06g142100 |
| Deletion | Chr11 | 20937497 | 20937502 | 5 | |
| Deletion | Chr8 | 26413880 | 26414025 | 145 | |
| Deletion | Chr2 | 30861021 | 30861024 | 3 | OsKitaake02g314900 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 5794060 | 5794063 | 2 | |
| Insertion | Chr2 | 29670107 | 29670112 | 4 | |
| Insertion | Chr12 | 3515268 | 3515271 | 2 | |
| Insertion | Chr12 | 25653963 | 25653966 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 12466683 | 12507150 | |
| Inversion | Chr6 | 12505124 | 12507140 | OsKitaake06g133500 |
| Inversion | Chr4 | 21734259 | 22139558 | |
| Inversion | Chr4 | 21734267 | 22139567 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 717617 | Chr3 | 29286363 | |
| Translocation | Chr9 | 719428 | Chr3 | 29286373 |