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Mutant Information

Mutant Name	FN3893-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3893-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23256624 A-G Homo INTRON
SBS Chr1 24314957 A-T Homo INTERGENIC
SBS Chr2 9444166 G-T Hetero INTERGENIC
SBS Chr3 7214806 T-C Hetero INTERGENIC
SBS Chr3 13133402 T-C Hetero INTERGENIC
SBS Chr3 37082017 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g414500
SBS Chr3 37082020 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g414500
SBS Chr4 4148192 C-T Homo INTERGENIC
SBS Chr4 8948362 C-T Homo INTRON
SBS Chr4 19727892 A-G Hetero INTERGENIC
SBS Chr4 33059011 A-T Hetero INTERGENIC
SBS Chr4 33871416 G-T Hetero INTRON
SBS Chr4 35376684 T-G Hetero INTRON
SBS Chr5 2506058 G-A Homo INTRON
SBS Chr5 6755356 A-G Homo UTR_3_PRIME
SBS Chr5 6796056 C-T Homo INTERGENIC
SBS Chr5 17773450 C-T Hetero INTERGENIC
SBS Chr5 25087816 C-T Homo INTERGENIC
SBS Chr6 7919251 G-A Hetero INTERGENIC
SBS Chr6 16007661 T-G Hetero INTERGENIC
SBS Chr6 20080399 G-A Homo INTERGENIC
SBS Chr6 24861508 A-G Hetero INTERGENIC
SBS Chr7 26491058 C-T Homo UTR_3_PRIME
SBS Chr8 8078043 A-T Hetero INTRON
SBS Chr8 8890859 G-T Hetero INTERGENIC
SBS Chr8 9365529 C-T Hetero INTERGENIC
SBS Chr10 15517505 C-T Homo INTERGENIC
SBS Chr10 16852627 A-T Homo INTERGENIC
SBS Chr10 17603849 G-A Homo INTERGENIC
SBS Chr11 17740622 A-G Hetero INTERGENIC
SBS Chr11 25138985 C-T Homo INTERGENIC
SBS Chr12 12270558 G-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 718807 718819 12 OsKitaake07g008550
Deletion Chr4 4109089 4109091 2
Deletion Chr10 4213438 4213441 3
Deletion Chr10 4451477 4451478 1
Deletion Chr11 5580342 5580348 6
Deletion Chr5 6754548 6754557 9
Deletion Chr3 6786478 6786481 3
Deletion Chr5 6859564 6859565 1
Deletion Chr7 9969082 9969084 2
Deletion Chr11 14203719 14203737 18
Deletion Chr11 14550280 14550282 2
Deletion Chr3 20837814 20837816 2
Deletion Chr2 24085753 24085756 3 OsKitaake02g237300
Deletion Chr4 25490521 25490531 10
Deletion Chr12 26373975 26373987 12
Deletion Chr11 26667521 26667525 4
Deletion Chr3 29991459 29991460 1
Deletion Chr4 32774185 32774192 7 OsKitaake04g264400
Deletion Chr1 32950784 32950791 7
Deletion Chr4 33660321 33660323 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 24606123 24606126 2
Insertion Chr7 14159851 14159853 1
Insertion Chr8 21322688 21322691 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1029145 1175377 OsKitaake12g015500
Inversion Chr12 1029152 1175419 OsKitaake12g015500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23256624	A-G	Homo	INTRON
SBS	Chr1	24314957	A-T	Homo	INTERGENIC
SBS	Chr2	9444166	G-T	Hetero	INTERGENIC
SBS	Chr3	7214806	T-C	Hetero	INTERGENIC
SBS	Chr3	13133402	T-C	Hetero	INTERGENIC
SBS	Chr3	37082017	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g414500
SBS	Chr3	37082020	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g414500
SBS	Chr4	4148192	C-T	Homo	INTERGENIC
SBS	Chr4	8948362	C-T	Homo	INTRON
SBS	Chr4	19727892	A-G	Hetero	INTERGENIC
SBS	Chr4	33059011	A-T	Hetero	INTERGENIC
SBS	Chr4	33871416	G-T	Hetero	INTRON
SBS	Chr4	35376684	T-G	Hetero	INTRON
SBS	Chr5	2506058	G-A	Homo	INTRON
SBS	Chr5	6755356	A-G	Homo	UTR_3_PRIME
SBS	Chr5	6796056	C-T	Homo	INTERGENIC
SBS	Chr5	17773450	C-T	Hetero	INTERGENIC
SBS	Chr5	25087816	C-T	Homo	INTERGENIC
SBS	Chr6	7919251	G-A	Hetero	INTERGENIC
SBS	Chr6	16007661	T-G	Hetero	INTERGENIC
SBS	Chr6	20080399	G-A	Homo	INTERGENIC
SBS	Chr6	24861508	A-G	Hetero	INTERGENIC
SBS	Chr7	26491058	C-T	Homo	UTR_3_PRIME
SBS	Chr8	8078043	A-T	Hetero	INTRON
SBS	Chr8	8890859	G-T	Hetero	INTERGENIC
SBS	Chr8	9365529	C-T	Hetero	INTERGENIC
SBS	Chr10	15517505	C-T	Homo	INTERGENIC
SBS	Chr10	16852627	A-T	Homo	INTERGENIC
SBS	Chr10	17603849	G-A	Homo	INTERGENIC
SBS	Chr11	17740622	A-G	Hetero	INTERGENIC
SBS	Chr11	25138985	C-T	Homo	INTERGENIC
SBS	Chr12	12270558	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	718807	718819	12	OsKitaake07g008550
Deletion	Chr4	4109089	4109091	2
Deletion	Chr10	4213438	4213441	3
Deletion	Chr10	4451477	4451478	1
Deletion	Chr11	5580342	5580348	6
Deletion	Chr5	6754548	6754557	9
Deletion	Chr3	6786478	6786481	3
Deletion	Chr5	6859564	6859565	1
Deletion	Chr7	9969082	9969084	2
Deletion	Chr11	14203719	14203737	18
Deletion	Chr11	14550280	14550282	2
Deletion	Chr3	20837814	20837816	2
Deletion	Chr2	24085753	24085756	3	OsKitaake02g237300
Deletion	Chr4	25490521	25490531	10
Deletion	Chr12	26373975	26373987	12
Deletion	Chr11	26667521	26667525	4
Deletion	Chr3	29991459	29991460	1
Deletion	Chr4	32774185	32774192	7	OsKitaake04g264400
Deletion	Chr1	32950784	32950791	7
Deletion	Chr4	33660321	33660323	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1029145	1175377	OsKitaake12g015500
Inversion	Chr12	1029152	1175419	OsKitaake12g015500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes