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Mutant Information

Mutant Name	FN3896-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3896-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3666362 T-A Homo INTERGENIC
SBS Chr1 23756088 T-A Hetero INTRON
SBS Chr1 37588162 C-A Hetero INTERGENIC
SBS Chr1 40089333 A-G Hetero INTERGENIC
SBS Chr2 20977284 C-T Homo INTERGENIC
SBS Chr3 5409903 C-T Hetero INTRON
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 24294709 T-A Homo UTR_3_PRIME
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 29897835 C-T Homo INTERGENIC
SBS Chr4 9165725 C-T Homo INTERGENIC
SBS Chr6 6168265 C-T Hetero SPLICE_SITE_REGION
SBS Chr6 22816621 T-C Hetero INTERGENIC
SBS Chr6 24737216 G-T Hetero INTERGENIC
SBS Chr7 12295749 G-A Hetero INTERGENIC
SBS Chr7 13583971 T-G Hetero INTERGENIC
SBS Chr7 13583972 C-A Hetero INTERGENIC
SBS Chr7 14228970 G-C Hetero UTR_3_PRIME
SBS Chr7 17772030 G-A Hetero INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr10 12171314 T-C Hetero INTERGENIC
SBS Chr11 19339793 C-T Hetero INTERGENIC
SBS Chr11 23190033 C-T Hetero INTERGENIC
SBS Chr11 27606361 C-G Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2587726 2587727 1
Deletion Chr4 20874007 20874017 10
Deletion Chr3 26149001 26452000 302999 10
Deletion Chr5 30167792 30167793 1
Deletion Chr3 35476943 35476944 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 4036415 4036418 2
Insertion Chr9 14647933 14647936 2
Insertion Chr8 12243254 12243256 1
Insertion Chr12 14489846 14489848 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2530113 2832840 OsKitaake07g033700
Inversion Chr7 2530132 2832841 OsKitaake07g033700

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 17576703 Chr3 28628535 OsKitaake06g162700
Translocation Chr6 17577357 Chr3 28628547 OsKitaake06g162700
Translocation Chr6 17578013 Chr5 377886 OsKitaake06g162700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3666362	T-A	Homo	INTERGENIC
SBS	Chr1	23756088	T-A	Hetero	INTRON
SBS	Chr1	37588162	C-A	Hetero	INTERGENIC
SBS	Chr1	40089333	A-G	Hetero	INTERGENIC
SBS	Chr2	20977284	C-T	Homo	INTERGENIC
SBS	Chr3	5409903	C-T	Hetero	INTRON
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	24294709	T-A	Homo	UTR_3_PRIME
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	29897835	C-T	Homo	INTERGENIC
SBS	Chr4	9165725	C-T	Homo	INTERGENIC
SBS	Chr6	6168265	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr6	22816621	T-C	Hetero	INTERGENIC
SBS	Chr6	24737216	G-T	Hetero	INTERGENIC
SBS	Chr7	12295749	G-A	Hetero	INTERGENIC
SBS	Chr7	13583971	T-G	Hetero	INTERGENIC
SBS	Chr7	13583972	C-A	Hetero	INTERGENIC
SBS	Chr7	14228970	G-C	Hetero	UTR_3_PRIME
SBS	Chr7	17772030	G-A	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr10	12171314	T-C	Hetero	INTERGENIC
SBS	Chr11	19339793	C-T	Hetero	INTERGENIC
SBS	Chr11	23190033	C-T	Hetero	INTERGENIC
SBS	Chr11	27606361	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2587726	2587727	1
Deletion	Chr4	20874007	20874017	10
Deletion	Chr3	26149001	26452000	302999	10
Deletion	Chr5	30167792	30167793	1
Deletion	Chr3	35476943	35476944	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2530113	2832840	OsKitaake07g033700
Inversion	Chr7	2530132	2832841	OsKitaake07g033700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes