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Mutant Information

Mutant Name	FN3897-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3897-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1256345 G-C Homo INTERGENIC
SBS Chr1 9066194 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g116600
SBS Chr1 10919344 C-G Homo INTERGENIC
SBS Chr1 10958950 G-T Homo INTERGENIC
SBS Chr1 11664986 C-A Homo INTERGENIC
SBS Chr1 12483260 G-C Hetero INTRON
SBS Chr1 22691505 G-A Hetero INTERGENIC
SBS Chr1 23164088 T-C Hetero INTRON
SBS Chr1 23164114 G-A Hetero INTRON
SBS Chr1 32042923 T-A Hetero INTERGENIC
SBS Chr1 36994078 T-C Hetero INTRON
SBS Chr1 38921346 G-C Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 14112859 G-T Homo INTERGENIC
SBS Chr2 16524521 G-A Homo INTERGENIC
SBS Chr2 16853019 A-C Homo INTERGENIC
SBS Chr2 25081310 G-A Hetero INTERGENIC
SBS Chr3 1928613 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 4768515 T-G Homo INTERGENIC
SBS Chr3 13239398 T-A Homo INTERGENIC
SBS Chr3 15180944 A-G Homo INTERGENIC
SBS Chr3 17219553 G-C Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr5 6072843 G-A Homo INTERGENIC
SBS Chr5 8692385 G-A Homo INTERGENIC
SBS Chr5 13492090 C-A Homo INTERGENIC
SBS Chr5 19095444 G-A Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr6 4088204 T-C Hetero UTR_3_PRIME
SBS Chr6 19836266 G-A Hetero INTERGENIC
SBS Chr6 23923580 A-T Hetero INTERGENIC
SBS Chr6 25377354 G-A Hetero INTERGENIC
SBS Chr6 26879126 C-A Hetero UTR_5_PRIME
SBS Chr6 26879128 G-T Hetero UTR_5_PRIME
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr8 18112720 G-A Hetero INTERGENIC
SBS Chr8 18319400 C-T Hetero INTERGENIC
SBS Chr10 4222331 A-G Hetero INTRON
SBS Chr10 5539113 G-A Hetero INTERGENIC
SBS Chr10 5539114 C-T Hetero INTERGENIC
SBS Chr11 6816807 T-C Homo INTRON
SBS Chr11 21264816 A-G Homo INTERGENIC
SBS Chr12 19085872 A-G Hetero INTRON
SBS Chr12 23208092 G-A Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr7 725083 725085 2
Deletion Chr10 1705744 1705752 8
Deletion Chr7 2028141 2028142 1
Deletion Chr11 2669959 2669965 6
Deletion Chr5 6037456 6037460 4
Deletion Chr5 6518086 6518104 18
Deletion Chr8 9563861 9563865 4
Deletion Chr10 11331254 11331256 2
Deletion Chr7 12109995 12109996 1
Deletion Chr9 12550001 12577000 26999 4
Deletion Chr5 13508865 13508871 6
Deletion Chr10 13926300 13926302 2
Deletion Chr2 16428394 16428396 2
Deletion Chr8 18114542 18114551 9
Deletion Chr6 18628548 18628549 1
Deletion Chr12 19682512 19682526 14
Deletion Chr12 20401232 20401236 4
Deletion Chr12 20687162 20687171 9
Deletion Chr1 22552001 22570000 17999 OsKitaake01g215800
Deletion Chr8 22711485 22711491 6
Deletion Chr12 25187183 25187221 38
Deletion Chr3 26540001 26679000 138999 6
Deletion Chr7 27303334 27303335 1
Deletion Chr7 29376895 29376899 4
Deletion Chr1 35462282 35462291 9 OsKitaake01g374500

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4702043 5191352 2
Inversion Chr1 4702051 5191355 2
Inversion Chr2 7755193 8202635 OsKitaake02g104900
Inversion Chr2 7755202 8202639 OsKitaake02g104900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1256345	G-C	Homo	INTERGENIC
SBS	Chr1	9066194	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g116600
SBS	Chr1	10919344	C-G	Homo	INTERGENIC
SBS	Chr1	10958950	G-T	Homo	INTERGENIC
SBS	Chr1	11664986	C-A	Homo	INTERGENIC
SBS	Chr1	12483260	G-C	Hetero	INTRON
SBS	Chr1	22691505	G-A	Hetero	INTERGENIC
SBS	Chr1	23164088	T-C	Hetero	INTRON
SBS	Chr1	23164114	G-A	Hetero	INTRON
SBS	Chr1	32042923	T-A	Hetero	INTERGENIC
SBS	Chr1	36994078	T-C	Hetero	INTRON
SBS	Chr1	38921346	G-C	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	14112859	G-T	Homo	INTERGENIC
SBS	Chr2	16524521	G-A	Homo	INTERGENIC
SBS	Chr2	16853019	A-C	Homo	INTERGENIC
SBS	Chr2	25081310	G-A	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	4768515	T-G	Homo	INTERGENIC
SBS	Chr3	13239398	T-A	Homo	INTERGENIC
SBS	Chr3	15180944	A-G	Homo	INTERGENIC
SBS	Chr3	17219553	G-C	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr5	6072843	G-A	Homo	INTERGENIC
SBS	Chr5	8692385	G-A	Homo	INTERGENIC
SBS	Chr5	13492090	C-A	Homo	INTERGENIC
SBS	Chr5	19095444	G-A	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr6	4088204	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	19836266	G-A	Hetero	INTERGENIC
SBS	Chr6	23923580	A-T	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Hetero	INTERGENIC
SBS	Chr6	26879126	C-A	Hetero	UTR_5_PRIME
SBS	Chr6	26879128	G-T	Hetero	UTR_5_PRIME
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr8	18112720	G-A	Hetero	INTERGENIC
SBS	Chr8	18319400	C-T	Hetero	INTERGENIC
SBS	Chr10	4222331	A-G	Hetero	INTRON
SBS	Chr10	5539113	G-A	Hetero	INTERGENIC
SBS	Chr10	5539114	C-T	Hetero	INTERGENIC
SBS	Chr11	6816807	T-C	Homo	INTRON
SBS	Chr11	21264816	A-G	Homo	INTERGENIC
SBS	Chr12	19085872	A-G	Hetero	INTRON
SBS	Chr12	23208092	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr7	725083	725085	2
Deletion	Chr10	1705744	1705752	8
Deletion	Chr7	2028141	2028142	1
Deletion	Chr11	2669959	2669965	6
Deletion	Chr5	6037456	6037460	4
Deletion	Chr5	6518086	6518104	18
Deletion	Chr8	9563861	9563865	4
Deletion	Chr10	11331254	11331256	2
Deletion	Chr7	12109995	12109996	1
Deletion	Chr9	12550001	12577000	26999	4
Deletion	Chr5	13508865	13508871	6
Deletion	Chr10	13926300	13926302	2
Deletion	Chr2	16428394	16428396	2
Deletion	Chr8	18114542	18114551	9
Deletion	Chr6	18628548	18628549	1
Deletion	Chr12	19682512	19682526	14
Deletion	Chr12	20401232	20401236	4
Deletion	Chr12	20687162	20687171	9
Deletion	Chr1	22552001	22570000	17999	OsKitaake01g215800
Deletion	Chr8	22711485	22711491	6
Deletion	Chr12	25187183	25187221	38
Deletion	Chr3	26540001	26679000	138999	6
Deletion	Chr7	27303334	27303335	1
Deletion	Chr7	29376895	29376899	4
Deletion	Chr1	35462282	35462291	9	OsKitaake01g374500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4702043	5191352	2
Inversion	Chr1	4702051	5191355	2
Inversion	Chr2	7755193	8202635	OsKitaake02g104900
Inversion	Chr2	7755202	8202639	OsKitaake02g104900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes