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Mutant Information

Mutant Name	FN3899-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3899-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5522993 A-T Hetero INTERGENIC
SBS Chr1 10495491 C-T Hetero INTERGENIC
SBS Chr1 11739794 C-G Hetero INTERGENIC
SBS Chr1 35273310 A-G Homo INTERGENIC
SBS Chr1 43975622 T-A Hetero INTERGENIC
SBS Chr2 4142162 A-T Hetero INTERGENIC
SBS Chr2 17090280 G-A Homo INTERGENIC
SBS Chr2 20497653 C-T Hetero INTERGENIC
SBS Chr2 20931818 G-A Homo INTRON
SBS Chr2 21315271 T-C Homo INTERGENIC
SBS Chr3 11072241 T-G Homo INTERGENIC
SBS Chr3 14997725 G-A Hetero INTERGENIC
SBS Chr3 15255813 C-T Homo INTERGENIC
SBS Chr3 19319515 G-A Hetero INTERGENIC
SBS Chr3 31545950 C-G Homo INTERGENIC
SBS Chr4 1132656 T-A Hetero UTR_3_PRIME
SBS Chr4 31971593 C-T Hetero INTERGENIC
SBS Chr5 5690617 A-T Homo INTERGENIC
SBS Chr5 19803674 T-C Homo INTERGENIC
SBS Chr6 1028946 T-C Homo INTERGENIC
SBS Chr6 8280017 G-T Hetero INTERGENIC
SBS Chr6 23457557 C-T Hetero INTERGENIC
SBS Chr6 24827810 T-C Hetero INTERGENIC
SBS Chr7 8356819 G-T Homo INTERGENIC
SBS Chr8 8524931 C-A Homo INTERGENIC
SBS Chr10 2709762 C-T Hetero INTERGENIC
SBS Chr10 4156543 T-G Hetero INTERGENIC
SBS Chr10 4755581 A-C Hetero INTERGENIC
SBS Chr12 1725382 T-A Homo UTR_3_PRIME
SBS Chr12 8858885 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2321318 2321330 12
Deletion Chr12 3723578 3723580 2
Deletion Chr4 7993891 7993892 1
Deletion Chr12 20528878 20528887 9
Deletion Chr5 30015001 30115000 99999 8
Deletion Chr5 30171001 30184000 12999
Deletion Chr5 30194001 30205000 10999
Deletion Chr2 35361276 35361286 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 31694539 31694544 4
Insertion Chr4 48669 48672 2
Insertion Chr5 20220093 20220096 2
Insertion Chr12 26142518 26142521 2
Insertion Chr2 25139969 25139971 1
Insertion Chr9 12635637 12635640 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 23311906 Chr11 16724221

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5522993	A-T	Hetero	INTERGENIC
SBS	Chr1	10495491	C-T	Hetero	INTERGENIC
SBS	Chr1	11739794	C-G	Hetero	INTERGENIC
SBS	Chr1	35273310	A-G	Homo	INTERGENIC
SBS	Chr1	43975622	T-A	Hetero	INTERGENIC
SBS	Chr2	4142162	A-T	Hetero	INTERGENIC
SBS	Chr2	17090280	G-A	Homo	INTERGENIC
SBS	Chr2	20497653	C-T	Hetero	INTERGENIC
SBS	Chr2	20931818	G-A	Homo	INTRON
SBS	Chr2	21315271	T-C	Homo	INTERGENIC
SBS	Chr3	11072241	T-G	Homo	INTERGENIC
SBS	Chr3	14997725	G-A	Hetero	INTERGENIC
SBS	Chr3	15255813	C-T	Homo	INTERGENIC
SBS	Chr3	19319515	G-A	Hetero	INTERGENIC
SBS	Chr3	31545950	C-G	Homo	INTERGENIC
SBS	Chr4	1132656	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	31971593	C-T	Hetero	INTERGENIC
SBS	Chr5	5690617	A-T	Homo	INTERGENIC
SBS	Chr5	19803674	T-C	Homo	INTERGENIC
SBS	Chr6	1028946	T-C	Homo	INTERGENIC
SBS	Chr6	8280017	G-T	Hetero	INTERGENIC
SBS	Chr6	23457557	C-T	Hetero	INTERGENIC
SBS	Chr6	24827810	T-C	Hetero	INTERGENIC
SBS	Chr7	8356819	G-T	Homo	INTERGENIC
SBS	Chr8	8524931	C-A	Homo	INTERGENIC
SBS	Chr10	2709762	C-T	Hetero	INTERGENIC
SBS	Chr10	4156543	T-G	Hetero	INTERGENIC
SBS	Chr10	4755581	A-C	Hetero	INTERGENIC
SBS	Chr12	1725382	T-A	Homo	UTR_3_PRIME
SBS	Chr12	8858885	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2321318	2321330	12
Deletion	Chr12	3723578	3723580	2
Deletion	Chr4	7993891	7993892	1
Deletion	Chr12	20528878	20528887	9
Deletion	Chr5	30015001	30115000	99999	8
Deletion	Chr5	30171001	30184000	12999
Deletion	Chr5	30194001	30205000	10999
Deletion	Chr2	35361276	35361286	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	23311906	Chr11	16724221

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes