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Mutant Information

Mutant Name	FN3900-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3900-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9267705 T-C Homo INTERGENIC
SBS Chr1 26327966 T-C Hetero INTERGENIC
SBS Chr1 29601905 C-A Homo SYNONYMOUS_CODING
SBS Chr2 14966380 C-T Homo INTERGENIC
SBS Chr2 17647861 C-A Hetero INTERGENIC
SBS Chr4 2904598 G-A Hetero INTERGENIC
SBS Chr4 19048877 G-C Hetero INTERGENIC
SBS Chr6 3749495 C-T Homo INTRON
SBS Chr6 21832244 G-A Hetero INTERGENIC
SBS Chr6 30929429 T-A Hetero UTR_3_PRIME
SBS Chr7 112294 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 13939698 C-A Hetero INTERGENIC
SBS Chr8 10737604 A-T Hetero INTERGENIC
SBS Chr10 1520858 C-T Homo INTERGENIC
SBS Chr11 4031928 T-A Hetero INTERGENIC
SBS Chr11 24331465 G-T Hetero INTERGENIC
SBS Chr12 20655242 T-C Hetero INTERGENIC
SBS Chr12 22447988 C-T Homo INTERGENIC

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 7249368 7249375 7
Deletion Chr6 14770737 14770742 5
Deletion Chr1 26588174 26588175 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41914783 41914785 1
Insertion Chr5 29922928 29922932 3
Insertion Chr6 2252084 2252087 2
Insertion Chr1 9692959 9692961 1
Insertion Chr2 36584515 36584517 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 28141450 28169582 OsKitaake07g265600
Inversion Chr7 28141455 28170367 OsKitaake07g265600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10366920 Chr8 1321060 OsKitaake08g016900
Translocation Chr12 10370440 Chr8 1321054 OsKitaake08g016900
Translocation Chr7 17346993 Chr6 8570264 OsKitaake07g141200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9267705	T-C	Homo	INTERGENIC
SBS	Chr1	26327966	T-C	Hetero	INTERGENIC
SBS	Chr1	29601905	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	14966380	C-T	Homo	INTERGENIC
SBS	Chr2	17647861	C-A	Hetero	INTERGENIC
SBS	Chr4	2904598	G-A	Hetero	INTERGENIC
SBS	Chr4	19048877	G-C	Hetero	INTERGENIC
SBS	Chr6	3749495	C-T	Homo	INTRON
SBS	Chr6	21832244	G-A	Hetero	INTERGENIC
SBS	Chr6	30929429	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	112294	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	13939698	C-A	Hetero	INTERGENIC
SBS	Chr8	10737604	A-T	Hetero	INTERGENIC
SBS	Chr10	1520858	C-T	Homo	INTERGENIC
SBS	Chr11	4031928	T-A	Hetero	INTERGENIC
SBS	Chr11	24331465	G-T	Hetero	INTERGENIC
SBS	Chr12	20655242	T-C	Hetero	INTERGENIC
SBS	Chr12	22447988	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	7249368	7249375	7
Deletion	Chr6	14770737	14770742	5
Deletion	Chr1	26588174	26588175	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	28141450	28169582	OsKitaake07g265600
Inversion	Chr7	28141455	28170367	OsKitaake07g265600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes