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Mutant Information

Mutant Name	FN3902-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3902-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3098091 T-C Hetero INTERGENIC
SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 27235597 C-A Hetero INTERGENIC
SBS Chr1 39916035 T-A Hetero INTERGENIC
SBS Chr1 40428172 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g439000
SBS Chr2 5091397 T-A Hetero INTERGENIC
SBS Chr2 7737046 A-C Hetero INTERGENIC
SBS Chr2 8455943 A-G Hetero INTERGENIC
SBS Chr2 24380165 C-T Hetero INTRON
SBS Chr2 25829734 C-G Hetero INTERGENIC
SBS Chr2 30872942 G-T Hetero INTERGENIC
SBS Chr2 32616184 G-A Hetero INTERGENIC
SBS Chr3 708579 C-T Hetero START_GAINED
SBS Chr4 7550199 T-A Hetero INTERGENIC
SBS Chr4 8777859 A-G Hetero INTERGENIC
SBS Chr4 15180849 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g072900
SBS Chr4 31182230 A-G Homo START_GAINED
SBS Chr5 6577943 G-A Homo INTERGENIC
SBS Chr5 15503850 G-T Homo INTERGENIC
SBS Chr5 25279158 C-T Hetero INTERGENIC
SBS Chr6 14542692 C-T Hetero INTERGENIC
SBS Chr6 19590427 G-A Homo INTERGENIC
SBS Chr6 21329083 T-C Homo INTRON
SBS Chr7 3769362 G-T Hetero SYNONYMOUS_CODING
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr7 19643173 T-G Hetero INTERGENIC
SBS Chr7 21572571 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g180200
SBS Chr7 25314946 G-A Hetero INTERGENIC
SBS Chr7 29080592 T-C Hetero INTRON
SBS Chr8 13101510 C-A Homo INTERGENIC
SBS Chr8 15109255 T-A Homo INTRON
SBS Chr8 17809230 A-T Hetero INTRON
SBS Chr8 18380946 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g136900
SBS Chr8 23651458 A-T Hetero INTERGENIC
SBS Chr8 27778896 A-T Hetero INTRON
SBS Chr8 29037701 G-A Homo INTERGENIC
SBS Chr9 3660443 G-T Homo UTR_3_PRIME
SBS Chr9 9605740 G-A Homo INTERGENIC
SBS Chr9 17695230 C-T Hetero INTERGENIC
SBS Chr9 18300697 G-C Hetero INTERGENIC
SBS Chr9 22617640 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g207600
SBS Chr10 17163738 C-T Homo INTERGENIC
SBS Chr11 10804561 C-G Hetero INTERGENIC
SBS Chr11 15929865 C-T Hetero INTRON
SBS Chr12 2770317 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g041100
SBS Chr12 2770318 T-A Homo SYNONYMOUS_CODING
SBS Chr12 4598293 T-C Homo INTERGENIC
SBS Chr12 4889359 T-C Hetero INTERGENIC
SBS Chr12 8120891 A-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3866202 3866205 3
Deletion Chr8 4536471 4536473 2
Deletion Chr10 4612443 4612447 4
Deletion Chr12 7181973 7181977 4
Deletion Chr6 7576420 7576423 3
Deletion Chr8 8353839 8353841 2
Deletion Chr1 12569164 12569169 5
Deletion Chr8 13063151 13063156 5
Deletion Chr4 14383001 14406000 22999 OsKitaake04g068400
Deletion Chr7 16227278 16227280 2
Deletion Chr1 18481647 18481657 10
Deletion Chr1 20936104 20936106 2 OsKitaake01g205000
Deletion Chr6 21200036 21200064 28
Deletion Chr4 23510670 23510672 2 OsKitaake04g146500
Deletion Chr5 25433720 25433729 9 OsKitaake05g222100
Deletion Chr2 27609118 27609121 3 OsKitaake02g277500
Deletion Chr3 28739940 28739941 1
Deletion Chr3 29500859 29500860 1
Deletion Chr2 33411098 33411103 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13135367 13135370 2
Insertion Chr1 18498433 18498435 1
Insertion Chr12 19120522 19120525 2
Insertion Chr12 26503742 26503746 3
Insertion Chr1 8263843 8263846 2
Insertion Chr5 30229879 30229881 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 24927206 25808194 OsKitaake05g227000
Inversion Chr5 24927218 25808195 OsKitaake05g227000

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10361516 Chr4 21258570
Translocation Chr11 10361962 Chr4 21258575
Translocation Chr4 30081273 Chr3 15991834
Translocation Chr4 30081283 Chr3 15983802

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3098091	T-C	Hetero	INTERGENIC
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	27235597	C-A	Hetero	INTERGENIC
SBS	Chr1	39916035	T-A	Hetero	INTERGENIC
SBS	Chr1	40428172	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g439000
SBS	Chr2	5091397	T-A	Hetero	INTERGENIC
SBS	Chr2	7737046	A-C	Hetero	INTERGENIC
SBS	Chr2	8455943	A-G	Hetero	INTERGENIC
SBS	Chr2	24380165	C-T	Hetero	INTRON
SBS	Chr2	25829734	C-G	Hetero	INTERGENIC
SBS	Chr2	30872942	G-T	Hetero	INTERGENIC
SBS	Chr2	32616184	G-A	Hetero	INTERGENIC
SBS	Chr3	708579	C-T	Hetero	START_GAINED
SBS	Chr4	7550199	T-A	Hetero	INTERGENIC
SBS	Chr4	8777859	A-G	Hetero	INTERGENIC
SBS	Chr4	15180849	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g072900
SBS	Chr4	31182230	A-G	Homo	START_GAINED
SBS	Chr5	6577943	G-A	Homo	INTERGENIC
SBS	Chr5	15503850	G-T	Homo	INTERGENIC
SBS	Chr5	25279158	C-T	Hetero	INTERGENIC
SBS	Chr6	14542692	C-T	Hetero	INTERGENIC
SBS	Chr6	19590427	G-A	Homo	INTERGENIC
SBS	Chr6	21329083	T-C	Homo	INTRON
SBS	Chr7	3769362	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr7	19643173	T-G	Hetero	INTERGENIC
SBS	Chr7	21572571	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g180200
SBS	Chr7	25314946	G-A	Hetero	INTERGENIC
SBS	Chr7	29080592	T-C	Hetero	INTRON
SBS	Chr8	13101510	C-A	Homo	INTERGENIC
SBS	Chr8	15109255	T-A	Homo	INTRON
SBS	Chr8	17809230	A-T	Hetero	INTRON
SBS	Chr8	18380946	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g136900
SBS	Chr8	23651458	A-T	Hetero	INTERGENIC
SBS	Chr8	27778896	A-T	Hetero	INTRON
SBS	Chr8	29037701	G-A	Homo	INTERGENIC
SBS	Chr9	3660443	G-T	Homo	UTR_3_PRIME
SBS	Chr9	9605740	G-A	Homo	INTERGENIC
SBS	Chr9	17695230	C-T	Hetero	INTERGENIC
SBS	Chr9	18300697	G-C	Hetero	INTERGENIC
SBS	Chr9	22617640	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g207600
SBS	Chr10	17163738	C-T	Homo	INTERGENIC
SBS	Chr11	10804561	C-G	Hetero	INTERGENIC
SBS	Chr11	15929865	C-T	Hetero	INTRON
SBS	Chr12	2770317	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g041100
SBS	Chr12	2770318	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	4598293	T-C	Homo	INTERGENIC
SBS	Chr12	4889359	T-C	Hetero	INTERGENIC
SBS	Chr12	8120891	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3866202	3866205	3
Deletion	Chr8	4536471	4536473	2
Deletion	Chr10	4612443	4612447	4
Deletion	Chr12	7181973	7181977	4
Deletion	Chr6	7576420	7576423	3
Deletion	Chr8	8353839	8353841	2
Deletion	Chr1	12569164	12569169	5
Deletion	Chr8	13063151	13063156	5
Deletion	Chr4	14383001	14406000	22999	OsKitaake04g068400
Deletion	Chr7	16227278	16227280	2
Deletion	Chr1	18481647	18481657	10
Deletion	Chr1	20936104	20936106	2	OsKitaake01g205000
Deletion	Chr6	21200036	21200064	28
Deletion	Chr4	23510670	23510672	2	OsKitaake04g146500
Deletion	Chr5	25433720	25433729	9	OsKitaake05g222100
Deletion	Chr2	27609118	27609121	3	OsKitaake02g277500
Deletion	Chr3	28739940	28739941	1
Deletion	Chr3	29500859	29500860	1
Deletion	Chr2	33411098	33411103	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	24927206	25808194	OsKitaake05g227000
Inversion	Chr5	24927218	25808195	OsKitaake05g227000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes