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Mutant Information

Mutant Name	FN3903-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3903-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6191300 G-A Hetero INTERGENIC
SBS Chr1 6786021 G-A Hetero INTERGENIC
SBS Chr1 8729986 C-T Hetero UTR_3_PRIME
SBS Chr1 20760795 T-A Hetero INTERGENIC
SBS Chr1 24220160 G-A Hetero INTRON
SBS Chr1 26191666 A-T Hetero INTERGENIC
SBS Chr2 49815 T-C Hetero INTERGENIC
SBS Chr2 9768726 G-A Hetero INTERGENIC
SBS Chr2 13693151 G-A Hetero INTERGENIC
SBS Chr2 14587899 G-C Hetero INTERGENIC
SBS Chr2 17311725 G-A Hetero INTERGENIC
SBS Chr2 25779558 T-C Hetero INTERGENIC
SBS Chr3 2737304 T-A Hetero INTERGENIC
SBS Chr4 12726005 A-C Hetero INTERGENIC
SBS Chr4 17165360 C-G Hetero INTRON
SBS Chr4 18374361 T-C Hetero INTERGENIC
SBS Chr4 30444515 G-A Hetero UTR_5_PRIME
SBS Chr4 34768915 G-A Hetero INTERGENIC
SBS Chr5 15246816 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g117001
SBS Chr5 23470110 C-T Hetero INTERGENIC
SBS Chr6 16872702 G-A Homo INTERGENIC
SBS Chr6 17836850 G-A Hetero INTERGENIC
SBS Chr6 21226543 G-T Hetero INTERGENIC
SBS Chr6 26150095 C-G Homo INTERGENIC
SBS Chr8 4965564 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g055300
SBS Chr8 8139759 G-C Hetero UTR_3_PRIME
SBS Chr8 9891451 C-A Hetero INTERGENIC
SBS Chr8 18266968 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g136000
SBS Chr9 8922190 G-T Homo INTERGENIC
SBS Chr9 11133332 G-A Hetero INTERGENIC
SBS Chr9 13914958 A-T Hetero INTERGENIC
SBS Chr11 9971512 A-T Homo INTERGENIC
SBS Chr11 19265976 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 23128420 A-G Hetero INTERGENIC
SBS Chr11 23128421 C-A Hetero INTERGENIC
SBS Chr12 19934903 T-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2886332 2886336 4 OsKitaake07g036800
Deletion Chr4 4258627 4258628 1 OsKitaake04g021000
Deletion Chr1 4650932 4650934 2
Deletion Chr10 7809473 7809475 2
Deletion Chr12 11715414 11715569 155
Deletion Chr4 17966652 17966653 1
Deletion Chr4 19438001 19448000 9999 OsKitaake04g099601
Deletion Chr3 19494014 19494015 1
Deletion Chr6 20206250 20206265 15
Deletion Chr4 21690951 21690959 8
Deletion Chr4 21816935 21816938 3
Deletion Chr4 22716001 22725000 8999 2
Deletion Chr8 23425665 23425671 6
Deletion Chr11 23603637 23603644 7
Deletion Chr3 24423011 24423016 5
Deletion Chr4 24598146 24598148 2
Deletion Chr6 25516001 25578000 61999 12
Deletion Chr1 30418156 30418159 3 OsKitaake01g300850
Deletion Chr1 34253024 34253037 13 OsKitaake01g353000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1263381 1263384 2
Insertion Chr2 8493493 8493496 2
Insertion Chr3 9711938 9711943 4
Insertion Chr9 19668113 19668117 3
Insertion Chr10 23114439 23114442 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11571567 12431299

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1444309 Chr1 3948053 OsKitaake01g053300
Translocation Chr11 1444310 Chr1 3948050 OsKitaake01g053300
Translocation Chr10 8667986 Chr1 17284457
Translocation Chr6 25845595 Chr5 28486987
Translocation Chr6 25845597 Chr5 12188563
Translocation Chr6 25845816 Chr5 12188544
Translocation Chr6 25845836 Chr5 28479516 OsKitaake05g265300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6191300	G-A	Hetero	INTERGENIC
SBS	Chr1	6786021	G-A	Hetero	INTERGENIC
SBS	Chr1	8729986	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	20760795	T-A	Hetero	INTERGENIC
SBS	Chr1	24220160	G-A	Hetero	INTRON
SBS	Chr1	26191666	A-T	Hetero	INTERGENIC
SBS	Chr2	49815	T-C	Hetero	INTERGENIC
SBS	Chr2	9768726	G-A	Hetero	INTERGENIC
SBS	Chr2	13693151	G-A	Hetero	INTERGENIC
SBS	Chr2	14587899	G-C	Hetero	INTERGENIC
SBS	Chr2	17311725	G-A	Hetero	INTERGENIC
SBS	Chr2	25779558	T-C	Hetero	INTERGENIC
SBS	Chr3	2737304	T-A	Hetero	INTERGENIC
SBS	Chr4	12726005	A-C	Hetero	INTERGENIC
SBS	Chr4	17165360	C-G	Hetero	INTRON
SBS	Chr4	18374361	T-C	Hetero	INTERGENIC
SBS	Chr4	30444515	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	34768915	G-A	Hetero	INTERGENIC
SBS	Chr5	15246816	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g117001
SBS	Chr5	23470110	C-T	Hetero	INTERGENIC
SBS	Chr6	16872702	G-A	Homo	INTERGENIC
SBS	Chr6	17836850	G-A	Hetero	INTERGENIC
SBS	Chr6	21226543	G-T	Hetero	INTERGENIC
SBS	Chr6	26150095	C-G	Homo	INTERGENIC
SBS	Chr8	4965564	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g055300
SBS	Chr8	8139759	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	9891451	C-A	Hetero	INTERGENIC
SBS	Chr8	18266968	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g136000
SBS	Chr9	8922190	G-T	Homo	INTERGENIC
SBS	Chr9	11133332	G-A	Hetero	INTERGENIC
SBS	Chr9	13914958	A-T	Hetero	INTERGENIC
SBS	Chr11	9971512	A-T	Homo	INTERGENIC
SBS	Chr11	19265976	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	23128420	A-G	Hetero	INTERGENIC
SBS	Chr11	23128421	C-A	Hetero	INTERGENIC
SBS	Chr12	19934903	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2886332	2886336	4	OsKitaake07g036800
Deletion	Chr4	4258627	4258628	1	OsKitaake04g021000
Deletion	Chr1	4650932	4650934	2
Deletion	Chr10	7809473	7809475	2
Deletion	Chr12	11715414	11715569	155
Deletion	Chr4	17966652	17966653	1
Deletion	Chr4	19438001	19448000	9999	OsKitaake04g099601
Deletion	Chr3	19494014	19494015	1
Deletion	Chr6	20206250	20206265	15
Deletion	Chr4	21690951	21690959	8
Deletion	Chr4	21816935	21816938	3
Deletion	Chr4	22716001	22725000	8999	2
Deletion	Chr8	23425665	23425671	6
Deletion	Chr11	23603637	23603644	7
Deletion	Chr3	24423011	24423016	5
Deletion	Chr4	24598146	24598148	2
Deletion	Chr6	25516001	25578000	61999	12
Deletion	Chr1	30418156	30418159	3	OsKitaake01g300850
Deletion	Chr1	34253024	34253037	13	OsKitaake01g353000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11571567	12431299

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes