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| Mutant Information |
|---|
| Mutant Name | FN3905-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3905-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22211523 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 42798317 | T-G | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 11208324 | T-C | Homo | INTRON | |
| SBS | Chr2 | 35198513 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 1020428 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 1933329 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35490951 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 8294767 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13958841 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 7752304 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 16968576 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 5533388 | G-A | Homo | INTRON | |
| SBS | Chr8 | 8498847 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 11601420 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 11964749 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g071200 |
| SBS | Chr10 | 20472765 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24350746 | C-A | Homo | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1561845 | 1561863 | 18 | |
| Deletion | Chr8 | 7238001 | 7275000 | 36999 | 2 |
| Deletion | Chr2 | 12314504 | 12314511 | 7 | |
| Deletion | Chr1 | 18962522 | 18962523 | 1 | OsKitaake01g190400 |
| Deletion | Chr5 | 29515001 | 29561000 | 45999 | 9 |
| Deletion | Chr5 | 30212669 | 30212670 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 13431372 | 13431374 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 16819740 | 16990569 | OsKitaake05g130101 |
| Inversion | Chr5 | 16819750 | 16990577 | OsKitaake05g130101 |
| Inversion | Chr5 | 29364443 | 29514588 | OsKitaake05g280400 |
| Inversion | Chr5 | 29554667 | 29560071 | OsKitaake05g281300 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 7238006 | Chr1 | 20502336 | |
| Translocation | Chr9 | 7348041 | Chr5 | 29559506 | OsKitaake05g281300 |
| Translocation | Chr9 | 7348043 | Chr5 | 29559867 | OsKitaake05g281300 |