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Mutant Information

Mutant Name	FN3906-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3906-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15465218 T-C Hetero INTRON
SBS Chr1 16568135 T-G Hetero INTERGENIC
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr1 41728547 T-A Hetero INTERGENIC
SBS Chr1 43070100 A-C Hetero INTERGENIC
SBS Chr2 3100364 C-T Hetero INTERGENIC
SBS Chr2 17747460 G-A Hetero INTERGENIC
SBS Chr2 36215967 A-C Hetero INTERGENIC
SBS Chr3 37177403 G-A Hetero INTERGENIC
SBS Chr4 1538502 C-T Hetero INTERGENIC
SBS Chr4 2652988 C-T Hetero INTERGENIC
SBS Chr4 2652989 C-T Hetero INTERGENIC
SBS Chr4 17430939 T-A Homo INTERGENIC
SBS Chr4 25522964 C-A Hetero INTERGENIC
SBS Chr4 36595066 T-A Homo INTERGENIC
SBS Chr5 2105715 T-G Hetero INTERGENIC
SBS Chr5 12788890 G-A Homo INTERGENIC
SBS Chr5 22038470 A-G Homo INTERGENIC
SBS Chr5 29756398 A-T Homo INTERGENIC
SBS Chr6 19339733 G-A Homo INTERGENIC
SBS Chr6 22969340 A-G Hetero INTERGENIC
SBS Chr6 27789384 T-G Hetero INTERGENIC
SBS Chr7 1709119 C-T Hetero INTERGENIC
SBS Chr7 12110226 A-G Homo INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr8 8296399 A-T Hetero INTERGENIC
SBS Chr8 19426936 C-T Homo INTERGENIC
SBS Chr9 20166135 A-C Hetero INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 15698968 G-A Homo INTERGENIC
SBS Chr12 2470823 C-A Hetero INTERGENIC
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 12897983 C-T Hetero INTERGENIC
SBS Chr12 19965469 C-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2387194 2387204 10
Deletion Chr7 2627721 2627727 6
Deletion Chr5 7743919 7743920 1
Deletion Chr7 10913352 10913376 24
Deletion Chr6 12241300 12241301 1 OsKitaake06g131400
Deletion Chr12 14229925 14229942 17
Deletion Chr9 14610293 14610295 2
Deletion Chr3 16216460 16216465 5
Deletion Chr4 18490344 18490346 2
Deletion Chr3 24570598 24570601 3
Deletion Chr7 25054699 25054725 26

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2837653 2837656 2
Insertion Chr5 18670804 18670807 2
Insertion Chr7 3727929 3727932 2
Insertion Chr8 18482974 18482978 3
Insertion Chr12 3462884 3462887 2
Insertion Chr6 29025531 29025533 1
Insertion Chr7 8498072 8498074 1
Insertion Chr12 11710448 11710450 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1483187 Chr3 32027741
Translocation Chr5 11649430 Chr2 31562201 OsKitaake02g321864
Translocation Chr5 11649433 Chr2 31562173 OsKitaake02g321864

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15465218	T-C	Hetero	INTRON
SBS	Chr1	16568135	T-G	Hetero	INTERGENIC
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr1	41728547	T-A	Hetero	INTERGENIC
SBS	Chr1	43070100	A-C	Hetero	INTERGENIC
SBS	Chr2	3100364	C-T	Hetero	INTERGENIC
SBS	Chr2	17747460	G-A	Hetero	INTERGENIC
SBS	Chr2	36215967	A-C	Hetero	INTERGENIC
SBS	Chr3	37177403	G-A	Hetero	INTERGENIC
SBS	Chr4	1538502	C-T	Hetero	INTERGENIC
SBS	Chr4	2652988	C-T	Hetero	INTERGENIC
SBS	Chr4	2652989	C-T	Hetero	INTERGENIC
SBS	Chr4	17430939	T-A	Homo	INTERGENIC
SBS	Chr4	25522964	C-A	Hetero	INTERGENIC
SBS	Chr4	36595066	T-A	Homo	INTERGENIC
SBS	Chr5	2105715	T-G	Hetero	INTERGENIC
SBS	Chr5	12788890	G-A	Homo	INTERGENIC
SBS	Chr5	22038470	A-G	Homo	INTERGENIC
SBS	Chr5	29756398	A-T	Homo	INTERGENIC
SBS	Chr6	19339733	G-A	Homo	INTERGENIC
SBS	Chr6	22969340	A-G	Hetero	INTERGENIC
SBS	Chr6	27789384	T-G	Hetero	INTERGENIC
SBS	Chr7	1709119	C-T	Hetero	INTERGENIC
SBS	Chr7	12110226	A-G	Homo	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr8	8296399	A-T	Hetero	INTERGENIC
SBS	Chr8	19426936	C-T	Homo	INTERGENIC
SBS	Chr9	20166135	A-C	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	15698968	G-A	Homo	INTERGENIC
SBS	Chr12	2470823	C-A	Hetero	INTERGENIC
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	12897983	C-T	Hetero	INTERGENIC
SBS	Chr12	19965469	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2387194	2387204	10
Deletion	Chr7	2627721	2627727	6
Deletion	Chr5	7743919	7743920	1
Deletion	Chr7	10913352	10913376	24
Deletion	Chr6	12241300	12241301	1	OsKitaake06g131400
Deletion	Chr12	14229925	14229942	17
Deletion	Chr9	14610293	14610295	2
Deletion	Chr3	16216460	16216465	5
Deletion	Chr4	18490344	18490346	2
Deletion	Chr3	24570598	24570601	3
Deletion	Chr7	25054699	25054725	26

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1483187	Chr3	32027741
Translocation	Chr5	11649430	Chr2	31562201	OsKitaake02g321864
Translocation	Chr5	11649433	Chr2	31562173	OsKitaake02g321864

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes