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Mutant Information

Mutant Name	FN3909-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3909-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14110351 G-T Hetero INTERGENIC
SBS Chr1 21464881 C-T Hetero INTERGENIC
SBS Chr1 32788113 C-G Homo INTERGENIC
SBS Chr1 40400155 G-T Hetero INTRON
SBS Chr2 10678794 T-A Hetero INTERGENIC
SBS Chr2 12947189 A-G Hetero INTERGENIC
SBS Chr2 14532111 C-T Hetero INTERGENIC
SBS Chr2 14532112 A-T Hetero INTERGENIC
SBS Chr2 14962414 G-A Hetero INTERGENIC
SBS Chr2 15520901 A-G Hetero INTERGENIC
SBS Chr3 1662392 G-A Hetero SPLICE_SITE_REGION
SBS Chr3 8872375 T-A Hetero INTERGENIC
SBS Chr3 19723866 C-T Hetero INTERGENIC
SBS Chr3 34897583 A-T Hetero INTRON
SBS Chr3 35300327 A-T Hetero INTERGENIC
SBS Chr4 8300829 G-A Hetero START_GAINED
SBS Chr4 11544300 C-T Hetero INTERGENIC
SBS Chr4 13694782 T-A Hetero INTRON
SBS Chr5 10056198 C-T Homo INTRON
SBS Chr5 10058936 C-T Homo INTRON
SBS Chr6 15025918 G-A Hetero INTERGENIC
SBS Chr6 21647379 A-T Hetero INTERGENIC
SBS Chr6 27358041 T-C Homo INTERGENIC
SBS Chr7 5182685 G-A Hetero INTERGENIC
SBS Chr7 6357071 T-G Hetero INTERGENIC
SBS Chr7 6775130 T-A Hetero INTERGENIC
SBS Chr7 12779984 T-C Hetero INTERGENIC
SBS Chr7 13377289 C-T Hetero INTERGENIC
SBS Chr8 17247806 C-T Homo INTERGENIC
SBS Chr8 18018909 G-C Homo INTERGENIC
SBS Chr8 18564970 G-A Homo INTERGENIC
SBS Chr9 12836450 T-A Hetero INTERGENIC
SBS Chr9 17533602 G-A Hetero INTERGENIC
SBS Chr10 19380598 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g141100
SBS Chr11 6992485 G-A Homo INTERGENIC
SBS Chr11 13185411 G-A Homo INTERGENIC
SBS Chr11 13766738 A-G Homo INTERGENIC
SBS Chr11 15598933 T-C Homo INTERGENIC
SBS Chr11 16240564 A-G Homo INTERGENIC
SBS Chr11 27680305 G-A Hetero UTR_3_PRIME
SBS Chr12 6237294 A-T Hetero INTERGENIC
SBS Chr12 11208145 A-G Hetero INTERGENIC
SBS Chr12 12931555 C-T Hetero INTERGENIC
SBS Chr12 24490501 T-C Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 950835 950846 11
Deletion Chr12 6060001 6187000 126999 10
Deletion Chr12 6190001 6233000 42999 5
Deletion Chr8 6443553 6443554 1
Deletion Chr10 6568395 6568401 6
Deletion Chr8 9595367 9595381 14
Deletion Chr5 10053494 10053521 27
Deletion Chr5 10599855 10599857 2
Deletion Chr3 11832908 11832909 1
Deletion Chr6 12322001 12560000 237999 21
Deletion Chr11 14154604 14154613 9
Deletion Chr12 14804001 14819000 14999 OsKitaake12g117600
Deletion Chr12 14822001 14863000 40999 3
Deletion Chr11 28228777 28228778 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 20397799 20397802 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5458461 5951833 2
Inversion Chr7 5458472 5951832 2
Inversion Chr3 7952144 7997108 OsKitaake03g110100
Inversion Chr3 7952147 7997109 OsKitaake03g110100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14110351	G-T	Hetero	INTERGENIC
SBS	Chr1	21464881	C-T	Hetero	INTERGENIC
SBS	Chr1	32788113	C-G	Homo	INTERGENIC
SBS	Chr1	40400155	G-T	Hetero	INTRON
SBS	Chr2	10678794	T-A	Hetero	INTERGENIC
SBS	Chr2	12947189	A-G	Hetero	INTERGENIC
SBS	Chr2	14532111	C-T	Hetero	INTERGENIC
SBS	Chr2	14532112	A-T	Hetero	INTERGENIC
SBS	Chr2	14962414	G-A	Hetero	INTERGENIC
SBS	Chr2	15520901	A-G	Hetero	INTERGENIC
SBS	Chr3	1662392	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	8872375	T-A	Hetero	INTERGENIC
SBS	Chr3	19723866	C-T	Hetero	INTERGENIC
SBS	Chr3	34897583	A-T	Hetero	INTRON
SBS	Chr3	35300327	A-T	Hetero	INTERGENIC
SBS	Chr4	8300829	G-A	Hetero	START_GAINED
SBS	Chr4	11544300	C-T	Hetero	INTERGENIC
SBS	Chr4	13694782	T-A	Hetero	INTRON
SBS	Chr5	10056198	C-T	Homo	INTRON
SBS	Chr5	10058936	C-T	Homo	INTRON
SBS	Chr6	15025918	G-A	Hetero	INTERGENIC
SBS	Chr6	21647379	A-T	Hetero	INTERGENIC
SBS	Chr6	27358041	T-C	Homo	INTERGENIC
SBS	Chr7	5182685	G-A	Hetero	INTERGENIC
SBS	Chr7	6357071	T-G	Hetero	INTERGENIC
SBS	Chr7	6775130	T-A	Hetero	INTERGENIC
SBS	Chr7	12779984	T-C	Hetero	INTERGENIC
SBS	Chr7	13377289	C-T	Hetero	INTERGENIC
SBS	Chr8	17247806	C-T	Homo	INTERGENIC
SBS	Chr8	18018909	G-C	Homo	INTERGENIC
SBS	Chr8	18564970	G-A	Homo	INTERGENIC
SBS	Chr9	12836450	T-A	Hetero	INTERGENIC
SBS	Chr9	17533602	G-A	Hetero	INTERGENIC
SBS	Chr10	19380598	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g141100
SBS	Chr11	6992485	G-A	Homo	INTERGENIC
SBS	Chr11	13185411	G-A	Homo	INTERGENIC
SBS	Chr11	13766738	A-G	Homo	INTERGENIC
SBS	Chr11	15598933	T-C	Homo	INTERGENIC
SBS	Chr11	16240564	A-G	Homo	INTERGENIC
SBS	Chr11	27680305	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	6237294	A-T	Hetero	INTERGENIC
SBS	Chr12	11208145	A-G	Hetero	INTERGENIC
SBS	Chr12	12931555	C-T	Hetero	INTERGENIC
SBS	Chr12	24490501	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	950835	950846	11
Deletion	Chr12	6060001	6187000	126999	10
Deletion	Chr12	6190001	6233000	42999	5
Deletion	Chr8	6443553	6443554	1
Deletion	Chr10	6568395	6568401	6
Deletion	Chr8	9595367	9595381	14
Deletion	Chr5	10053494	10053521	27
Deletion	Chr5	10599855	10599857	2
Deletion	Chr3	11832908	11832909	1
Deletion	Chr6	12322001	12560000	237999	21
Deletion	Chr11	14154604	14154613	9
Deletion	Chr12	14804001	14819000	14999	OsKitaake12g117600
Deletion	Chr12	14822001	14863000	40999	3
Deletion	Chr11	28228777	28228778	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5458461	5951833	2
Inversion	Chr7	5458472	5951832	2
Inversion	Chr3	7952144	7997108	OsKitaake03g110100
Inversion	Chr3	7952147	7997109	OsKitaake03g110100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes