Search Kitaake

Mutant Information

Mutant Name	FN391-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN391-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9098353 T-A Hetero INTERGENIC
SBS Chr1 9098358 T-A Hetero INTERGENIC
SBS Chr1 12506147 T-C Hetero INTERGENIC
SBS Chr1 30389490 A-G Hetero INTERGENIC
SBS Chr1 44099953 A-T Hetero INTRON
SBS Chr2 18883783 A-T Hetero INTERGENIC
SBS Chr2 24745039 A-T Hetero INTERGENIC
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 8530498 G-A Hetero INTERGENIC
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 15222057 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g197400
SBS Chr3 20725701 G-A Hetero INTERGENIC
SBS Chr4 14045831 T-C Homo INTERGENIC
SBS Chr4 14741033 C-A Hetero INTERGENIC
SBS Chr5 5127600 A-G Hetero INTRON
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr5 24569638 C-A Hetero INTERGENIC
SBS Chr5 25928414 A-T Hetero INTERGENIC
SBS Chr6 24467835 T-A Homo SYNONYMOUS_CODING
SBS Chr7 11635069 G-T Homo INTERGENIC
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 3920100 C-T Homo INTERGENIC
SBS Chr8 4369487 G-T Hetero INTERGENIC
SBS Chr8 13359954 C-T Hetero INTERGENIC
SBS Chr9 5731367 G-A Hetero INTERGENIC
SBS Chr10 6054860 A-G Hetero INTERGENIC
SBS Chr10 9415715 A-C Hetero INTERGENIC
SBS Chr10 14636892 T-G Hetero INTERGENIC
SBS Chr10 16867452 C-T Homo INTERGENIC
SBS Chr11 6411027 A-C Homo INTRON
SBS Chr11 12752255 C-T Homo INTERGENIC
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr12 2888466 C-T Hetero INTERGENIC
SBS Chr12 3097699 T-C Hetero INTERGENIC
SBS Chr12 14465385 C-T Hetero INTERGENIC
SBS Chr12 18170937 T-C Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2806032 2806037 5
Deletion Chr4 4622098 4622100 2
Deletion Chr10 11947046 11947048 2
Deletion Chr5 12394221 12394224 3
Deletion Chr11 12749238 12749251 13
Deletion Chr7 13723001 13730000 6999
Deletion Chr5 14255050 14255058 8
Deletion Chr4 19317169 19317172 3 OsKitaake04g098300
Deletion Chr4 19804237 19804238 1
Deletion Chr3 20337876 20337877 1
Deletion Chr11 20777981 20777983 2
Deletion Chr7 20784061 20784062 1 OsKitaake07g171000
Deletion Chr11 20935182 20935192 10
Deletion Chr10 22454097 22454101 4
Deletion Chr8 22703089 22703105 16
Deletion Chr10 23357138 23357140 2
Deletion Chr5 24638921 24638923 2
Deletion Chr6 25320508 25320518 10
Deletion Chr5 29521841 29521842 1 OsKitaake05g280500
Deletion Chr1 38405473 38405474 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29077620 29077624 3
Insertion Chr6 5878477 5878480 2
Insertion Chr6 10288908 10288912 3
Insertion Chr6 12069051 12069054 2
Insertion Chr8 16004741 16004744 2
Insertion Chr6 21477894 21477897 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9098353	T-A	Hetero	INTERGENIC
SBS	Chr1	9098358	T-A	Hetero	INTERGENIC
SBS	Chr1	12506147	T-C	Hetero	INTERGENIC
SBS	Chr1	30389490	A-G	Hetero	INTERGENIC
SBS	Chr1	44099953	A-T	Hetero	INTRON
SBS	Chr2	18883783	A-T	Hetero	INTERGENIC
SBS	Chr2	24745039	A-T	Hetero	INTERGENIC
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	8530498	G-A	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	15222057	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g197400
SBS	Chr3	20725701	G-A	Hetero	INTERGENIC
SBS	Chr4	14045831	T-C	Homo	INTERGENIC
SBS	Chr4	14741033	C-A	Hetero	INTERGENIC
SBS	Chr5	5127600	A-G	Hetero	INTRON
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Hetero	INTERGENIC
SBS	Chr5	25928414	A-T	Hetero	INTERGENIC
SBS	Chr6	24467835	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	11635069	G-T	Homo	INTERGENIC
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	3920100	C-T	Homo	INTERGENIC
SBS	Chr8	4369487	G-T	Hetero	INTERGENIC
SBS	Chr8	13359954	C-T	Hetero	INTERGENIC
SBS	Chr9	5731367	G-A	Hetero	INTERGENIC
SBS	Chr10	6054860	A-G	Hetero	INTERGENIC
SBS	Chr10	9415715	A-C	Hetero	INTERGENIC
SBS	Chr10	14636892	T-G	Hetero	INTERGENIC
SBS	Chr10	16867452	C-T	Homo	INTERGENIC
SBS	Chr11	6411027	A-C	Homo	INTRON
SBS	Chr11	12752255	C-T	Homo	INTERGENIC
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr12	2888466	C-T	Hetero	INTERGENIC
SBS	Chr12	3097699	T-C	Hetero	INTERGENIC
SBS	Chr12	14465385	C-T	Hetero	INTERGENIC
SBS	Chr12	18170937	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2806032	2806037	5
Deletion	Chr4	4622098	4622100	2
Deletion	Chr10	11947046	11947048	2
Deletion	Chr5	12394221	12394224	3
Deletion	Chr11	12749238	12749251	13
Deletion	Chr7	13723001	13730000	6999
Deletion	Chr5	14255050	14255058	8
Deletion	Chr4	19317169	19317172	3	OsKitaake04g098300
Deletion	Chr4	19804237	19804238	1
Deletion	Chr3	20337876	20337877	1
Deletion	Chr11	20777981	20777983	2
Deletion	Chr7	20784061	20784062	1	OsKitaake07g171000
Deletion	Chr11	20935182	20935192	10
Deletion	Chr10	22454097	22454101	4
Deletion	Chr8	22703089	22703105	16
Deletion	Chr10	23357138	23357140	2
Deletion	Chr5	24638921	24638923	2
Deletion	Chr6	25320508	25320518	10
Deletion	Chr5	29521841	29521842	1	OsKitaake05g280500
Deletion	Chr1	38405473	38405474	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes