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Mutant Information

Mutant Name	FN3910-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3910-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28169244 G-T Hetero INTERGENIC
SBS Chr1 32544352 C-T Hetero INTERGENIC
SBS Chr1 35938566 G-A Hetero INTERGENIC
SBS Chr1 35938567 C-A Hetero INTERGENIC
SBS Chr1 43181551 C-T Hetero INTERGENIC
SBS Chr2 10134118 A-G Hetero INTRON
SBS Chr2 21368915 G-A Hetero INTERGENIC
SBS Chr3 20098992 A-T Hetero INTERGENIC
SBS Chr3 22261267 A-T Hetero INTERGENIC
SBS Chr3 25229154 C-T Homo INTERGENIC
SBS Chr3 30620578 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g321700
SBS Chr4 12243857 G-A Hetero INTERGENIC
SBS Chr4 19565537 G-T Homo INTERGENIC
SBS Chr4 24818310 C-T Hetero INTERGENIC
SBS Chr4 32762324 T-A Hetero SPLICE_SITE_REGION
SBS Chr5 23388417 A-T Hetero INTERGENIC
SBS Chr6 1298773 C-A Homo INTERGENIC
SBS Chr6 3653108 C-A Hetero INTRON
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr6 24105434 G-C Homo NON_SYNONYMOUS_CODING OsKitaake06g213500
SBS Chr6 27771969 G-T Hetero INTRON
SBS Chr10 3423319 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g025950
SBS Chr10 6690123 G-T Hetero INTERGENIC
SBS Chr11 29059288 G-C Hetero INTRON
SBS Chr12 3230358 T-A Homo INTERGENIC
SBS Chr12 3230359 A-T Homo INTERGENIC
SBS Chr12 3230360 A-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3195418 3195428 10
Deletion Chr10 3396015 3396033 18
Deletion Chr3 4089589 4089590 1
Deletion Chr6 5195968 5195979 11
Deletion Chr5 7216996 7216998 2
Deletion Chr5 11905156 11905168 12
Deletion Chr7 20961974 20961981 7
Deletion Chr5 23416001 23447000 30999 5
Deletion Chr3 25228233 25228238 5
Deletion Chr7 26247975 26247977 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37336729 37336734 4
Insertion Chr2 6599093 6599096 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 844033 Chr1 31530117
Translocation Chr7 868580 Chr2 13305741 2
Translocation Chr12 10947026 Chr10 3825658 OsKitaake12g101400
Translocation Chr7 11922384 Chr6 16020233 OsKitaake06g154000
Translocation Chr2 13301327 Chr1 31530682 OsKitaake02g147500
Translocation Chr4 16424665 Chr1 31530656
Translocation Chr11 25734840 Chr7 869312 OsKitaake07g010700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28169244	G-T	Hetero	INTERGENIC
SBS	Chr1	32544352	C-T	Hetero	INTERGENIC
SBS	Chr1	35938566	G-A	Hetero	INTERGENIC
SBS	Chr1	35938567	C-A	Hetero	INTERGENIC
SBS	Chr1	43181551	C-T	Hetero	INTERGENIC
SBS	Chr2	10134118	A-G	Hetero	INTRON
SBS	Chr2	21368915	G-A	Hetero	INTERGENIC
SBS	Chr3	20098992	A-T	Hetero	INTERGENIC
SBS	Chr3	22261267	A-T	Hetero	INTERGENIC
SBS	Chr3	25229154	C-T	Homo	INTERGENIC
SBS	Chr3	30620578	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g321700
SBS	Chr4	12243857	G-A	Hetero	INTERGENIC
SBS	Chr4	19565537	G-T	Homo	INTERGENIC
SBS	Chr4	24818310	C-T	Hetero	INTERGENIC
SBS	Chr4	32762324	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr5	23388417	A-T	Hetero	INTERGENIC
SBS	Chr6	1298773	C-A	Homo	INTERGENIC
SBS	Chr6	3653108	C-A	Hetero	INTRON
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr6	24105434	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g213500
SBS	Chr6	27771969	G-T	Hetero	INTRON
SBS	Chr10	3423319	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g025950
SBS	Chr10	6690123	G-T	Hetero	INTERGENIC
SBS	Chr11	29059288	G-C	Hetero	INTRON
SBS	Chr12	3230358	T-A	Homo	INTERGENIC
SBS	Chr12	3230359	A-T	Homo	INTERGENIC
SBS	Chr12	3230360	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3195418	3195428	10
Deletion	Chr10	3396015	3396033	18
Deletion	Chr3	4089589	4089590	1
Deletion	Chr6	5195968	5195979	11
Deletion	Chr5	7216996	7216998	2
Deletion	Chr5	11905156	11905168	12
Deletion	Chr7	20961974	20961981	7
Deletion	Chr5	23416001	23447000	30999	5
Deletion	Chr3	25228233	25228238	5
Deletion	Chr7	26247975	26247977	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	844033	Chr1	31530117
Translocation	Chr7	868580	Chr2	13305741	2
Translocation	Chr12	10947026	Chr10	3825658	OsKitaake12g101400
Translocation	Chr7	11922384	Chr6	16020233	OsKitaake06g154000
Translocation	Chr2	13301327	Chr1	31530682	OsKitaake02g147500
Translocation	Chr4	16424665	Chr1	31530656
Translocation	Chr11	25734840	Chr7	869312	OsKitaake07g010700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes