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Mutant Information

Mutant Name	FN3911-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3911-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17419171 C-T Hetero INTERGENIC
SBS Chr1 33883691 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g348100
SBS Chr1 38374882 C-G Hetero UTR_5_PRIME
SBS Chr2 1032290 G-C Hetero INTRON
SBS Chr2 1264427 T-G Hetero INTERGENIC
SBS Chr2 9131431 G-A Hetero INTERGENIC
SBS Chr2 27035237 T-A Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 32833044 A-T Hetero INTERGENIC
SBS Chr4 1689741 C-T Hetero INTERGENIC
SBS Chr4 9798493 A-G Hetero INTERGENIC
SBS Chr4 11499617 G-A Hetero INTERGENIC
SBS Chr4 12495451 T-C Homo INTERGENIC
SBS Chr5 6985190 C-G Homo INTRON
SBS Chr5 22588775 C-T Hetero INTERGENIC
SBS Chr5 26253119 G-A Hetero INTRON
SBS Chr6 14994250 T-C Homo INTERGENIC
SBS Chr6 30106353 T-C Hetero INTERGENIC
SBS Chr6 30106362 T-A Hetero INTERGENIC
SBS Chr7 4612026 G-T Hetero INTRON
SBS Chr7 8157254 T-C Hetero INTERGENIC
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr7 20771819 A-C Homo INTERGENIC
SBS Chr7 24930263 T-C Homo UTR_5_PRIME
SBS Chr7 25751690 C-A Hetero INTERGENIC
SBS Chr9 6901707 G-T Homo INTERGENIC
SBS Chr9 16586809 G-A Hetero INTERGENIC
SBS Chr10 13829414 C-T Homo INTERGENIC
SBS Chr11 7394942 C-T Hetero INTERGENIC
SBS Chr11 7873754 G-A Hetero INTRON
SBS Chr11 20111562 G-A Homo INTERGENIC
SBS Chr12 13953560 T-C Homo INTERGENIC
SBS Chr12 16581509 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4880916 4881264 348
Deletion Chr10 4955724 4955739 15
Deletion Chr10 5220138 5220143 5
Deletion Chr11 9530001 9713000 182999 7
Deletion Chr10 11261001 11373000 111999 7
Deletion Chr4 12495585 12495592 7
Deletion Chr12 12616654 12616658 4
Deletion Chr8 13380281 13380284 3
Deletion Chr1 15990001 16027000 36999 2
Deletion Chr1 17664645 17664646 1
Deletion Chr10 21681615 21681616 1
Deletion Chr6 23737621 23737629 8 OsKitaake06g208703
Deletion Chr8 25562661 25562663 2
Deletion Chr5 29156117 29156118 1
Deletion Chr1 31884679 31884684 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 22162146 22640153 OsKitaake01g211800
Inversion Chr1 22162148 22640155 OsKitaake01g211800
Inversion Chr5 29077567 29128871 2
Inversion Chr5 29077572 29128881 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11371914 Chr7 17668458
Translocation Chr10 11372507 Chr7 17668453
Translocation Chr6 20859528 Chr3 31919872 OsKitaake03g337300
Translocation Chr6 20875270 Chr3 31919875 OsKitaake03g337300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17419171	C-T	Hetero	INTERGENIC
SBS	Chr1	33883691	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g348100
SBS	Chr1	38374882	C-G	Hetero	UTR_5_PRIME
SBS	Chr2	1032290	G-C	Hetero	INTRON
SBS	Chr2	1264427	T-G	Hetero	INTERGENIC
SBS	Chr2	9131431	G-A	Hetero	INTERGENIC
SBS	Chr2	27035237	T-A	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	32833044	A-T	Hetero	INTERGENIC
SBS	Chr4	1689741	C-T	Hetero	INTERGENIC
SBS	Chr4	9798493	A-G	Hetero	INTERGENIC
SBS	Chr4	11499617	G-A	Hetero	INTERGENIC
SBS	Chr4	12495451	T-C	Homo	INTERGENIC
SBS	Chr5	6985190	C-G	Homo	INTRON
SBS	Chr5	22588775	C-T	Hetero	INTERGENIC
SBS	Chr5	26253119	G-A	Hetero	INTRON
SBS	Chr6	14994250	T-C	Homo	INTERGENIC
SBS	Chr6	30106353	T-C	Hetero	INTERGENIC
SBS	Chr6	30106362	T-A	Hetero	INTERGENIC
SBS	Chr7	4612026	G-T	Hetero	INTRON
SBS	Chr7	8157254	T-C	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr7	20771819	A-C	Homo	INTERGENIC
SBS	Chr7	24930263	T-C	Homo	UTR_5_PRIME
SBS	Chr7	25751690	C-A	Hetero	INTERGENIC
SBS	Chr9	6901707	G-T	Homo	INTERGENIC
SBS	Chr9	16586809	G-A	Hetero	INTERGENIC
SBS	Chr10	13829414	C-T	Homo	INTERGENIC
SBS	Chr11	7394942	C-T	Hetero	INTERGENIC
SBS	Chr11	7873754	G-A	Hetero	INTRON
SBS	Chr11	20111562	G-A	Homo	INTERGENIC
SBS	Chr12	13953560	T-C	Homo	INTERGENIC
SBS	Chr12	16581509	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4880916	4881264	348
Deletion	Chr10	4955724	4955739	15
Deletion	Chr10	5220138	5220143	5
Deletion	Chr11	9530001	9713000	182999	7
Deletion	Chr10	11261001	11373000	111999	7
Deletion	Chr4	12495585	12495592	7
Deletion	Chr12	12616654	12616658	4
Deletion	Chr8	13380281	13380284	3
Deletion	Chr1	15990001	16027000	36999	2
Deletion	Chr1	17664645	17664646	1
Deletion	Chr10	21681615	21681616	1
Deletion	Chr6	23737621	23737629	8	OsKitaake06g208703
Deletion	Chr8	25562661	25562663	2
Deletion	Chr5	29156117	29156118	1
Deletion	Chr1	31884679	31884684	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	22162146	22640153	OsKitaake01g211800
Inversion	Chr1	22162148	22640155	OsKitaake01g211800
Inversion	Chr5	29077567	29128871	2
Inversion	Chr5	29077572	29128881	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes