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Mutant Information

Mutant Name	FN3912-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3912-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 91534 G-A Homo INTRON
SBS Chr1 91544 T-A Homo INTRON
SBS Chr1 91545 C-A Homo INTRON
SBS Chr1 559653 G-A Homo INTERGENIC
SBS Chr1 38327741 G-T Hetero UTR_3_PRIME
SBS Chr1 38327742 C-A Hetero UTR_3_PRIME
SBS Chr2 32054960 T-A Hetero INTERGENIC
SBS Chr3 3495137 T-G Hetero INTERGENIC
SBS Chr3 9935496 G-A Hetero INTRON
SBS Chr3 13319557 A-C Hetero INTERGENIC
SBS Chr4 3195109 G-A Homo INTERGENIC
SBS Chr4 10078756 A-G Hetero INTRON
SBS Chr4 25150094 G-A Hetero INTERGENIC
SBS Chr5 20073106 C-T Hetero INTERGENIC
SBS Chr6 398283 G-A Hetero INTERGENIC
SBS Chr6 1409368 C-T Homo INTRON
SBS Chr6 13912034 T-A Hetero INTRON
SBS Chr6 19156953 G-A Hetero INTRON
SBS Chr6 21267202 G-T Hetero START_GAINED
SBS Chr7 10885250 T-C Homo INTERGENIC
SBS Chr7 11529908 G-A Hetero INTERGENIC
SBS Chr7 21390681 A-T Hetero INTERGENIC
SBS Chr7 21390682 A-T Hetero INTERGENIC
SBS Chr7 22021625 T-C Homo INTERGENIC
SBS Chr8 14597819 C-T Hetero INTERGENIC
SBS Chr8 14737277 G-C Hetero INTERGENIC
SBS Chr10 2172006 G-A Hetero INTERGENIC
SBS Chr10 3408288 G-A Hetero INTERGENIC
SBS Chr10 6893316 A-T Homo INTERGENIC
SBS Chr10 15519426 C-A Hetero UTR_5_PRIME
SBS Chr10 19652372 A-G Hetero INTERGENIC
SBS Chr11 6294624 G-A Hetero INTERGENIC
SBS Chr12 8405741 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 6673874 6673877 3
Deletion Chr10 7522557 7522558 1
Deletion Chr10 7772001 7918000 145999 5
Deletion Chr12 9064374 9064377 3
Deletion Chr9 10753864 10753869 5
Deletion Chr2 11298730 11298745 15
Deletion Chr7 11325462 11325464 2
Deletion Chr9 15224033 15224034 1
Deletion Chr6 16507001 16519000 11999
Deletion Chr4 30011536 30011538 2
Deletion Chr1 31959752 31959755 3
Deletion Chr2 36517761 36517765 4
Deletion Chr1 37212904 37212912 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 17065125 17065128 2
Insertion Chr11 27868800 27868832 31

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 13998691 14571823 OsKitaake06g148700
Inversion Chr6 13998697 14571832 OsKitaake06g148700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	91534	G-A	Homo	INTRON
SBS	Chr1	91544	T-A	Homo	INTRON
SBS	Chr1	91545	C-A	Homo	INTRON
SBS	Chr1	559653	G-A	Homo	INTERGENIC
SBS	Chr1	38327741	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	38327742	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	32054960	T-A	Hetero	INTERGENIC
SBS	Chr3	3495137	T-G	Hetero	INTERGENIC
SBS	Chr3	9935496	G-A	Hetero	INTRON
SBS	Chr3	13319557	A-C	Hetero	INTERGENIC
SBS	Chr4	3195109	G-A	Homo	INTERGENIC
SBS	Chr4	10078756	A-G	Hetero	INTRON
SBS	Chr4	25150094	G-A	Hetero	INTERGENIC
SBS	Chr5	20073106	C-T	Hetero	INTERGENIC
SBS	Chr6	398283	G-A	Hetero	INTERGENIC
SBS	Chr6	1409368	C-T	Homo	INTRON
SBS	Chr6	13912034	T-A	Hetero	INTRON
SBS	Chr6	19156953	G-A	Hetero	INTRON
SBS	Chr6	21267202	G-T	Hetero	START_GAINED
SBS	Chr7	10885250	T-C	Homo	INTERGENIC
SBS	Chr7	11529908	G-A	Hetero	INTERGENIC
SBS	Chr7	21390681	A-T	Hetero	INTERGENIC
SBS	Chr7	21390682	A-T	Hetero	INTERGENIC
SBS	Chr7	22021625	T-C	Homo	INTERGENIC
SBS	Chr8	14597819	C-T	Hetero	INTERGENIC
SBS	Chr8	14737277	G-C	Hetero	INTERGENIC
SBS	Chr10	2172006	G-A	Hetero	INTERGENIC
SBS	Chr10	3408288	G-A	Hetero	INTERGENIC
SBS	Chr10	6893316	A-T	Homo	INTERGENIC
SBS	Chr10	15519426	C-A	Hetero	UTR_5_PRIME
SBS	Chr10	19652372	A-G	Hetero	INTERGENIC
SBS	Chr11	6294624	G-A	Hetero	INTERGENIC
SBS	Chr12	8405741	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	6673874	6673877	3
Deletion	Chr10	7522557	7522558	1
Deletion	Chr10	7772001	7918000	145999	5
Deletion	Chr12	9064374	9064377	3
Deletion	Chr9	10753864	10753869	5
Deletion	Chr2	11298730	11298745	15
Deletion	Chr7	11325462	11325464	2
Deletion	Chr9	15224033	15224034	1
Deletion	Chr6	16507001	16519000	11999
Deletion	Chr4	30011536	30011538	2
Deletion	Chr1	31959752	31959755	3
Deletion	Chr2	36517761	36517765	4
Deletion	Chr1	37212904	37212912	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13998691	14571823	OsKitaake06g148700
Inversion	Chr6	13998697	14571832	OsKitaake06g148700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes