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Mutant Information

Mutant Name	FN3913-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3913-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14802087 C-G Hetero INTERGENIC
SBS Chr1 14828071 A-T Hetero INTERGENIC
SBS Chr1 15181057 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g144300
SBS Chr1 18130012 A-T Hetero INTERGENIC
SBS Chr1 21582978 A-T Hetero INTRON
SBS Chr3 1212643 C-A Hetero INTERGENIC
SBS Chr3 18535601 T-A Homo INTRON
SBS Chr3 33265052 C-T Hetero INTERGENIC
SBS Chr4 2602635 T-G Hetero INTERGENIC
SBS Chr4 4436563 T-A Hetero INTERGENIC
SBS Chr4 6842850 C-A Hetero INTERGENIC
SBS Chr4 14533494 C-T Hetero INTERGENIC
SBS Chr5 9071741 G-T Homo INTERGENIC
SBS Chr6 15136596 C-T Homo INTERGENIC
SBS Chr6 28747465 A-T Hetero INTERGENIC
SBS Chr6 30085819 T-C Hetero UTR_3_PRIME
SBS Chr7 2416376 G-T Hetero INTERGENIC
SBS Chr7 10787519 C-T Hetero INTERGENIC
SBS Chr7 18607548 G-C Hetero INTERGENIC
SBS Chr8 9921017 C-T Hetero INTERGENIC
SBS Chr8 16064722 A-G Hetero INTERGENIC
SBS Chr8 17616386 G-A Hetero INTERGENIC
SBS Chr8 18146370 G-A Hetero INTERGENIC
SBS Chr8 19380925 A-G Hetero INTERGENIC
SBS Chr9 6478638 C-T Hetero INTERGENIC
SBS Chr9 7405110 C-T Hetero INTERGENIC
SBS Chr9 9129863 A-G Hetero INTERGENIC
SBS Chr9 9387462 C-T Hetero INTERGENIC
SBS Chr10 3479708 G-T Hetero INTERGENIC
SBS Chr10 4102057 G-A Hetero INTERGENIC
SBS Chr10 14975364 C-A Hetero INTERGENIC
SBS Chr11 11104170 T-G Hetero INTERGENIC
SBS Chr11 12395878 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 19600947 A-G Homo INTERGENIC
SBS Chr12 21535311 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8119240 8119243 3
Deletion Chr1 10116955 10116956 1
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr5 11948417 11948420 3
Deletion Chr10 13525446 13525453 7
Deletion Chr11 15022375 15022377 2
Deletion Chr2 15674625 15674626 1
Deletion Chr10 15751194 15751195 1
Deletion Chr4 16128335 16128336 1
Deletion Chr5 16407653 16407665 12
Deletion Chr8 19326020 19326048 28
Deletion Chr2 22744405 22744408 3
Deletion Chr12 23081055 23081059 4
Deletion Chr7 25057048 25057050 2
Deletion Chr3 33614260 33614276 16

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15128289 15128292 2
Insertion Chr3 5824814 5824816 1
Insertion Chr7 20999508 20999511 2
Insertion Chr8 9398673 9398676 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19440710 19848389 OsKitaake07g162100
Inversion Chr7 19440712 19848403 OsKitaake07g162100
Inversion Chr3 29251615 29548590 OsKitaake03g308000
Inversion Chr3 29251619 29548603 OsKitaake03g308000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14802087	C-G	Hetero	INTERGENIC
SBS	Chr1	14828071	A-T	Hetero	INTERGENIC
SBS	Chr1	15181057	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g144300
SBS	Chr1	18130012	A-T	Hetero	INTERGENIC
SBS	Chr1	21582978	A-T	Hetero	INTRON
SBS	Chr3	1212643	C-A	Hetero	INTERGENIC
SBS	Chr3	18535601	T-A	Homo	INTRON
SBS	Chr3	33265052	C-T	Hetero	INTERGENIC
SBS	Chr4	2602635	T-G	Hetero	INTERGENIC
SBS	Chr4	4436563	T-A	Hetero	INTERGENIC
SBS	Chr4	6842850	C-A	Hetero	INTERGENIC
SBS	Chr4	14533494	C-T	Hetero	INTERGENIC
SBS	Chr5	9071741	G-T	Homo	INTERGENIC
SBS	Chr6	15136596	C-T	Homo	INTERGENIC
SBS	Chr6	28747465	A-T	Hetero	INTERGENIC
SBS	Chr6	30085819	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	2416376	G-T	Hetero	INTERGENIC
SBS	Chr7	10787519	C-T	Hetero	INTERGENIC
SBS	Chr7	18607548	G-C	Hetero	INTERGENIC
SBS	Chr8	9921017	C-T	Hetero	INTERGENIC
SBS	Chr8	16064722	A-G	Hetero	INTERGENIC
SBS	Chr8	17616386	G-A	Hetero	INTERGENIC
SBS	Chr8	18146370	G-A	Hetero	INTERGENIC
SBS	Chr8	19380925	A-G	Hetero	INTERGENIC
SBS	Chr9	6478638	C-T	Hetero	INTERGENIC
SBS	Chr9	7405110	C-T	Hetero	INTERGENIC
SBS	Chr9	9129863	A-G	Hetero	INTERGENIC
SBS	Chr9	9387462	C-T	Hetero	INTERGENIC
SBS	Chr10	3479708	G-T	Hetero	INTERGENIC
SBS	Chr10	4102057	G-A	Hetero	INTERGENIC
SBS	Chr10	14975364	C-A	Hetero	INTERGENIC
SBS	Chr11	11104170	T-G	Hetero	INTERGENIC
SBS	Chr11	12395878	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	19600947	A-G	Homo	INTERGENIC
SBS	Chr12	21535311	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8119240	8119243	3
Deletion	Chr1	10116955	10116956	1
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr5	11948417	11948420	3
Deletion	Chr10	13525446	13525453	7
Deletion	Chr11	15022375	15022377	2
Deletion	Chr2	15674625	15674626	1
Deletion	Chr10	15751194	15751195	1
Deletion	Chr4	16128335	16128336	1
Deletion	Chr5	16407653	16407665	12
Deletion	Chr8	19326020	19326048	28
Deletion	Chr2	22744405	22744408	3
Deletion	Chr12	23081055	23081059	4
Deletion	Chr7	25057048	25057050	2
Deletion	Chr3	33614260	33614276	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19440710	19848389	OsKitaake07g162100
Inversion	Chr7	19440712	19848403	OsKitaake07g162100
Inversion	Chr3	29251615	29548590	OsKitaake03g308000
Inversion	Chr3	29251619	29548603	OsKitaake03g308000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes