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| Mutant Information |
|---|
| Mutant Name | FN3914-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3914-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9118456 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32333700 | T-C | Homo | INTRON | |
| SBS | Chr1 | 39576804 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 11097774 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g129700 |
| SBS | Chr2 | 28307709 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 28731513 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 9932574 | C-G | Hetero | INTRON | |
| SBS | Chr3 | 13175416 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19027067 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19619559 | G-T | Homo | INTRON | |
| SBS | Chr4 | 16720372 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 17209980 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29114448 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 161322 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20071033 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20071035 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 29073269 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 29073270 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 13319346 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6341370 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23713389 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6004297 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11029383 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13445878 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4829023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14945154 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18806591 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20257219 | C-T | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4014620 | 4014835 | 215 | |
| Deletion | Chr4 | 5406001 | 5622000 | 215999 | 12 |
| Deletion | Chr7 | 5500561 | 5500564 | 3 | OsKitaake07g067000 |
| Deletion | Chr5 | 6657669 | 6657673 | 4 | |
| Deletion | Chr5 | 7033235 | 7033238 | 3 | OsKitaake05g070700 |
| Deletion | Chr5 | 7743836 | 7743849 | 13 | |
| Deletion | Chr2 | 26270490 | 26270493 | 3 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 10951906 | 10951910 | 3 | OsKitaake02g128200  |
| Insertion | Chr2 | 22131584 | 22131587 | 2 | |
| Insertion | Chr3 | 24483575 | 24483577 | 1 | |
| Insertion | Chr7 | 16882881 | 16882886 | 4 | |
| Insertion | Chr10 | 8421671 | 8421674 | 2 | |
| Insertion | Chr8 | 1411838 | 1411840 | 1 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 295177 | Chr3 | 37316363 | 2 |
| Translocation | Chr11 | 4944457 | Chr8 | 11268759 | OsKitaake08g100100 |
| Translocation | Chr11 | 4944471 | Chr3 | 32774670 | |
| Translocation | Chr4 | 13062729 | Chr2 | 24812927 | OsKitaake02g247100 |
| Translocation | Chr4 | 13063056 | Chr2 | 24812956 | OsKitaake02g247100 |
| Translocation | Chr12 | 25174000 | Chr2 | 24813651 | OsKitaake02g247100 |