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Mutant Information

Mutant Name	FN3915-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3915-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9570692 A-T Homo INTERGENIC
SBS Chr1 27908840 A-G Hetero INTERGENIC
SBS Chr1 37971998 C-T Hetero INTERGENIC
SBS Chr1 38613782 T-A Homo INTERGENIC
SBS Chr1 43191051 C-T Homo INTERGENIC
SBS Chr2 14587129 C-T Hetero INTERGENIC
SBS Chr3 12348064 T-A Hetero INTRON
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 36870844 C-T Hetero INTERGENIC
SBS Chr4 5172112 T-C Hetero INTERGENIC
SBS Chr4 9883889 C-T Hetero INTERGENIC
SBS Chr4 10094458 G-A Hetero INTERGENIC
SBS Chr5 8212851 G-A Hetero INTERGENIC
SBS Chr5 11759612 T-C Homo INTERGENIC
SBS Chr5 11759613 G-T Homo INTERGENIC
SBS Chr6 19402951 C-T Hetero INTERGENIC
SBS Chr8 9107607 A-T Hetero INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 23352135 G-A Hetero INTERGENIC
SBS Chr9 5020385 G-A Hetero INTERGENIC
SBS Chr9 5438699 G-T Hetero INTERGENIC
SBS Chr9 6361423 T-A Hetero INTERGENIC
SBS Chr9 13324064 A-G Homo INTRON
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr12 1080208 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 16878783 G-T Homo INTERGENIC
SBS Chr12 19116740 C-T Hetero INTERGENIC
SBS Chr12 19958784 T-A Hetero INTERGENIC
SBS Chr12 22402170 T-C Hetero SYNONYMOUS_CODING

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2491320 2491329 9
Deletion Chr6 3760003 3760009 6
Deletion Chr8 8610401 8610403 2
Deletion Chr3 8909001 8974000 64999 14
Deletion Chr1 9753872 9753873 1
Deletion Chr1 12358738 12358756 18
Deletion Chr9 12637208 12637214 6
Deletion Chr11 14590445 14590451 6
Deletion Chr6 17076188 17076189 1
Deletion Chr3 20660315 20660338 23
Deletion Chr3 21814755 21814756 1
Deletion Chr2 33422137 33422145 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41184133 41184136 2
Insertion Chr3 16736088 16736096 7
Insertion Chr7 705290 705300 9

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 9042041 9370652
Inversion Chr3 9042156 9370663

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 18666830 Chr1 31081938 OsKitaake01g310100
Translocation Chr8 18666851 Chr1 31082546 OsKitaake01g310100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9570692	A-T	Homo	INTERGENIC
SBS	Chr1	27908840	A-G	Hetero	INTERGENIC
SBS	Chr1	37971998	C-T	Hetero	INTERGENIC
SBS	Chr1	38613782	T-A	Homo	INTERGENIC
SBS	Chr1	43191051	C-T	Homo	INTERGENIC
SBS	Chr2	14587129	C-T	Hetero	INTERGENIC
SBS	Chr3	12348064	T-A	Hetero	INTRON
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	36870844	C-T	Hetero	INTERGENIC
SBS	Chr4	5172112	T-C	Hetero	INTERGENIC
SBS	Chr4	9883889	C-T	Hetero	INTERGENIC
SBS	Chr4	10094458	G-A	Hetero	INTERGENIC
SBS	Chr5	8212851	G-A	Hetero	INTERGENIC
SBS	Chr5	11759612	T-C	Homo	INTERGENIC
SBS	Chr5	11759613	G-T	Homo	INTERGENIC
SBS	Chr6	19402951	C-T	Hetero	INTERGENIC
SBS	Chr8	9107607	A-T	Hetero	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	23352135	G-A	Hetero	INTERGENIC
SBS	Chr9	5020385	G-A	Hetero	INTERGENIC
SBS	Chr9	5438699	G-T	Hetero	INTERGENIC
SBS	Chr9	6361423	T-A	Hetero	INTERGENIC
SBS	Chr9	13324064	A-G	Homo	INTRON
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr12	1080208	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	16878783	G-T	Homo	INTERGENIC
SBS	Chr12	19116740	C-T	Hetero	INTERGENIC
SBS	Chr12	19958784	T-A	Hetero	INTERGENIC
SBS	Chr12	22402170	T-C	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2491320	2491329	9
Deletion	Chr6	3760003	3760009	6
Deletion	Chr8	8610401	8610403	2
Deletion	Chr3	8909001	8974000	64999	14
Deletion	Chr1	9753872	9753873	1
Deletion	Chr1	12358738	12358756	18
Deletion	Chr9	12637208	12637214	6
Deletion	Chr11	14590445	14590451	6
Deletion	Chr6	17076188	17076189	1
Deletion	Chr3	20660315	20660338	23
Deletion	Chr3	21814755	21814756	1
Deletion	Chr2	33422137	33422145	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	9042041	9370652
Inversion	Chr3	9042156	9370663

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes