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Mutant Information

Mutant Name	FN3916-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3916-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7209601 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g090100
SBS Chr1 12036099 A-G Hetero INTERGENIC
SBS Chr1 14595879 C-T Hetero INTERGENIC
SBS Chr2 32398172 C-T Hetero INTERGENIC
SBS Chr3 1274012 G-A Homo INTRON
SBS Chr3 4485823 T-A Hetero STOP_GAINED OsKitaake03g064600
SBS Chr3 6179273 C-T Hetero INTRON
SBS Chr3 10129354 C-G Homo NON_SYNONYMOUS_CODING OsKitaake03g138700
SBS Chr3 19356575 A-G Hetero INTERGENIC
SBS Chr3 20656221 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g231400
SBS Chr3 20656222 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g231400
SBS Chr3 21287126 G-A Homo INTRON
SBS Chr3 29450392 G-T Homo INTERGENIC
SBS Chr4 5213052 T-A Hetero INTERGENIC
SBS Chr4 9792384 G-C Hetero INTERGENIC
SBS Chr4 10327439 C-T Hetero INTERGENIC
SBS Chr4 16965886 G-A Hetero INTERGENIC
SBS Chr4 35655881 G-A Hetero INTERGENIC
SBS Chr5 16049275 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g122900
SBS Chr5 17375861 A-G Hetero INTERGENIC
SBS Chr5 17624485 C-T Hetero INTERGENIC
SBS Chr5 27709390 G-T Homo INTERGENIC
SBS Chr6 4580699 G-A Hetero INTERGENIC
SBS Chr6 4580744 A-T Hetero INTERGENIC
SBS Chr6 6875022 C-T Hetero UTR_3_PRIME
SBS Chr6 12466755 G-A Hetero INTERGENIC
SBS Chr6 27624500 T-C Hetero INTERGENIC
SBS Chr7 12954906 G-A Homo INTERGENIC
SBS Chr8 14287473 C-A Homo INTRON
SBS Chr8 17078635 A-G Hetero INTERGENIC
SBS Chr8 26562865 G-T Hetero INTERGENIC
SBS Chr9 853239 G-A Hetero INTERGENIC
SBS Chr9 4269535 G-T Hetero INTERGENIC
SBS Chr9 6137849 G-T Hetero INTERGENIC
SBS Chr10 42995 G-A Hetero INTERGENIC
SBS Chr10 22619660 C-T Hetero INTERGENIC
SBS Chr11 6515436 A-C Hetero INTERGENIC
SBS Chr11 12872443 G-T Hetero INTERGENIC
SBS Chr11 14973763 G-A Hetero INTERGENIC
SBS Chr12 21143824 C-T Hetero INTRON
SBS Chr12 23110361 C-A Hetero INTERGENIC
SBS Chr12 25175621 C-A Hetero INTERGENIC
SBS Chr12 26485126 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1576428 1576434 6
Deletion Chr10 2829001 2886000 56999 2
Deletion Chr3 4253764 4253769 5
Deletion Chr12 6050697 6050700 3
Deletion Chr4 7341048 7341049 1
Deletion Chr9 8579584 8579598 14
Deletion Chr5 16562604 16562613 9
Deletion Chr10 17083425 17083439 14
Deletion Chr9 18188260 18188263 3
Deletion Chr3 19440649 19440653 4
Deletion Chr9 19567556 19567558 2
Deletion Chr5 23126216 23126223 7 OsKitaake05g192800
Deletion Chr12 25986739 25986746 7
Deletion Chr4 27518922 27518934 12
Deletion Chr2 30738348 30738353 5
Deletion Chr1 33921376 33921406 30
Deletion Chr3 34189001 34253000 63999 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17406277 17406280 2
Insertion Chr6 1014989 1014992 2
Insertion Chr7 1861555 1861557 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 9580862 10155293
Inversion Chr11 9580905 10155305

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 17431347 Chr2 36751261 2
Translocation Chr10 17431350 Chr2 36750975 2
Translocation Chr3 23428455 Chr1 30179882 OsKitaake01g297200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7209601	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g090100
SBS	Chr1	12036099	A-G	Hetero	INTERGENIC
SBS	Chr1	14595879	C-T	Hetero	INTERGENIC
SBS	Chr2	32398172	C-T	Hetero	INTERGENIC
SBS	Chr3	1274012	G-A	Homo	INTRON
SBS	Chr3	4485823	T-A	Hetero	STOP_GAINED	OsKitaake03g064600
SBS	Chr3	6179273	C-T	Hetero	INTRON
SBS	Chr3	10129354	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g138700
SBS	Chr3	19356575	A-G	Hetero	INTERGENIC
SBS	Chr3	20656221	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g231400
SBS	Chr3	20656222	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g231400
SBS	Chr3	21287126	G-A	Homo	INTRON
SBS	Chr3	29450392	G-T	Homo	INTERGENIC
SBS	Chr4	5213052	T-A	Hetero	INTERGENIC
SBS	Chr4	9792384	G-C	Hetero	INTERGENIC
SBS	Chr4	10327439	C-T	Hetero	INTERGENIC
SBS	Chr4	16965886	G-A	Hetero	INTERGENIC
SBS	Chr4	35655881	G-A	Hetero	INTERGENIC
SBS	Chr5	16049275	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g122900
SBS	Chr5	17375861	A-G	Hetero	INTERGENIC
SBS	Chr5	17624485	C-T	Hetero	INTERGENIC
SBS	Chr5	27709390	G-T	Homo	INTERGENIC
SBS	Chr6	4580699	G-A	Hetero	INTERGENIC
SBS	Chr6	4580744	A-T	Hetero	INTERGENIC
SBS	Chr6	6875022	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	12466755	G-A	Hetero	INTERGENIC
SBS	Chr6	27624500	T-C	Hetero	INTERGENIC
SBS	Chr7	12954906	G-A	Homo	INTERGENIC
SBS	Chr8	14287473	C-A	Homo	INTRON
SBS	Chr8	17078635	A-G	Hetero	INTERGENIC
SBS	Chr8	26562865	G-T	Hetero	INTERGENIC
SBS	Chr9	853239	G-A	Hetero	INTERGENIC
SBS	Chr9	4269535	G-T	Hetero	INTERGENIC
SBS	Chr9	6137849	G-T	Hetero	INTERGENIC
SBS	Chr10	42995	G-A	Hetero	INTERGENIC
SBS	Chr10	22619660	C-T	Hetero	INTERGENIC
SBS	Chr11	6515436	A-C	Hetero	INTERGENIC
SBS	Chr11	12872443	G-T	Hetero	INTERGENIC
SBS	Chr11	14973763	G-A	Hetero	INTERGENIC
SBS	Chr12	21143824	C-T	Hetero	INTRON
SBS	Chr12	23110361	C-A	Hetero	INTERGENIC
SBS	Chr12	25175621	C-A	Hetero	INTERGENIC
SBS	Chr12	26485126	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1576428	1576434	6
Deletion	Chr10	2829001	2886000	56999	2
Deletion	Chr3	4253764	4253769	5
Deletion	Chr12	6050697	6050700	3
Deletion	Chr4	7341048	7341049	1
Deletion	Chr9	8579584	8579598	14
Deletion	Chr5	16562604	16562613	9
Deletion	Chr10	17083425	17083439	14
Deletion	Chr9	18188260	18188263	3
Deletion	Chr3	19440649	19440653	4
Deletion	Chr9	19567556	19567558	2
Deletion	Chr5	23126216	23126223	7	OsKitaake05g192800
Deletion	Chr12	25986739	25986746	7
Deletion	Chr4	27518922	27518934	12
Deletion	Chr2	30738348	30738353	5
Deletion	Chr1	33921376	33921406	30
Deletion	Chr3	34189001	34253000	63999	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9580862	10155293
Inversion	Chr11	9580905	10155305

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes