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Mutant Information

Mutant Name	FN3917-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3917-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21635325 T-A Homo INTERGENIC
SBS Chr2 21738146 G-C Hetero INTRON
SBS Chr3 9717269 T-G Hetero INTERGENIC
SBS Chr4 8992227 G-C Hetero INTERGENIC
SBS Chr4 10828345 G-A Hetero INTERGENIC
SBS Chr4 14750894 C-G Hetero INTERGENIC
SBS Chr4 21247683 T-A Hetero INTERGENIC
SBS Chr4 34897227 T-C Hetero INTERGENIC
SBS Chr5 16748907 G-T Hetero INTERGENIC
SBS Chr5 26928368 C-T Homo UTR_3_PRIME
SBS Chr6 1685874 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g020400
SBS Chr6 6562329 G-T Hetero INTERGENIC
SBS Chr6 13723284 A-C Hetero INTERGENIC
SBS Chr7 9145712 G-A Hetero INTERGENIC
SBS Chr7 20158077 T-C Homo INTERGENIC
SBS Chr7 22382884 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g189700
SBS Chr8 5319656 C-G Homo INTERGENIC
SBS Chr8 6175022 T-C Homo INTERGENIC
SBS Chr9 645196 G-A Homo INTERGENIC
SBS Chr9 6188551 T-C Hetero INTRON
SBS Chr10 11220544 G-A Hetero INTERGENIC
SBS Chr10 19010477 G-A Hetero INTERGENIC
SBS Chr12 5382064 C-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2905051 2905060 9
Deletion Chr2 2984241 2984257 16 OsKitaake02g042500
Deletion Chr8 8927137 8927138 1
Deletion Chr6 13024213 13024223 10
Deletion Chr2 15350211 15350214 3
Deletion Chr8 16182192 16182206 14
Deletion Chr8 17964086 17964088 2
Deletion Chr8 18279368 18279374 6
Deletion Chr2 19882545 19882549 4
Deletion Chr2 20407961 20407967 6
Deletion Chr11 20497802 20497806 4
Deletion Chr3 28804280 28804281 1
Deletion Chr5 29673992 29673996 4 OsKitaake05g283400
Deletion Chr1 30205012 30205013 1
Deletion Chr1 39128758 39128760 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7372929 7372934 4
Insertion Chr4 32234385 32234387 1
Insertion Chr6 25298840 25298843 2
Insertion Chr12 21291361 21291366 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10516970 10606460
Inversion Chr4 10516973 10606462

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21635325	T-A	Homo	INTERGENIC
SBS	Chr2	21738146	G-C	Hetero	INTRON
SBS	Chr3	9717269	T-G	Hetero	INTERGENIC
SBS	Chr4	8992227	G-C	Hetero	INTERGENIC
SBS	Chr4	10828345	G-A	Hetero	INTERGENIC
SBS	Chr4	14750894	C-G	Hetero	INTERGENIC
SBS	Chr4	21247683	T-A	Hetero	INTERGENIC
SBS	Chr4	34897227	T-C	Hetero	INTERGENIC
SBS	Chr5	16748907	G-T	Hetero	INTERGENIC
SBS	Chr5	26928368	C-T	Homo	UTR_3_PRIME
SBS	Chr6	1685874	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g020400
SBS	Chr6	6562329	G-T	Hetero	INTERGENIC
SBS	Chr6	13723284	A-C	Hetero	INTERGENIC
SBS	Chr7	9145712	G-A	Hetero	INTERGENIC
SBS	Chr7	20158077	T-C	Homo	INTERGENIC
SBS	Chr7	22382884	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g189700
SBS	Chr8	5319656	C-G	Homo	INTERGENIC
SBS	Chr8	6175022	T-C	Homo	INTERGENIC
SBS	Chr9	645196	G-A	Homo	INTERGENIC
SBS	Chr9	6188551	T-C	Hetero	INTRON
SBS	Chr10	11220544	G-A	Hetero	INTERGENIC
SBS	Chr10	19010477	G-A	Hetero	INTERGENIC
SBS	Chr12	5382064	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2905051	2905060	9
Deletion	Chr2	2984241	2984257	16	OsKitaake02g042500
Deletion	Chr8	8927137	8927138	1
Deletion	Chr6	13024213	13024223	10
Deletion	Chr2	15350211	15350214	3
Deletion	Chr8	16182192	16182206	14
Deletion	Chr8	17964086	17964088	2
Deletion	Chr8	18279368	18279374	6
Deletion	Chr2	19882545	19882549	4
Deletion	Chr2	20407961	20407967	6
Deletion	Chr11	20497802	20497806	4
Deletion	Chr3	28804280	28804281	1
Deletion	Chr5	29673992	29673996	4	OsKitaake05g283400
Deletion	Chr1	30205012	30205013	1
Deletion	Chr1	39128758	39128760	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10516970	10606460
Inversion	Chr4	10516973	10606462

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes