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| Mutant Information |
|---|
| Mutant Name | FN3918-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3918-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7703524 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 15241500 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 15260734 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17430175 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 18036785 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 30562890 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31778234 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 4140891 | G-A | Homo | STOP_GAINED | OsKitaake03g058900 |
| SBS | Chr3 | 9235387 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 16049504 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 29042822 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4417976 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2952578 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 24284275 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5439529 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 8359546 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16323835 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12182156 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5057595 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18153828 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2407783 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 20514507 | T-A | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1084356 | 1084373 | 17 | |
| Deletion | Chr12 | 2750501 | 2750508 | 7 | OsKitaake12g040900 |
| Deletion | Chr1 | 3300841 | 3300842 | 1 | OsKitaake01g043200 |
| Deletion | Chr4 | 5574391 | 5574396 | 5 | |
| Deletion | Chr3 | 9595555 | 9595562 | 7 | |
| Deletion | Chr6 | 14747615 | 14747629 | 14 | |
| Deletion | Chr2 | 16863001 | 17019000 | 155999 | 4 |
| Deletion | Chr8 | 26517612 | 26517618 | 6 | |
| Deletion | Chr1 | 41163440 | 41163446 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 27344236 | 27344241 | 4 | |
| Insertion | Chr3 | 32406136 | 32406141 | 4 | |
| Insertion | Chr3 | 26310606 | 26310609 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 25867109 | 26298091 | OsKitaake04g180900 |
| Inversion | Chr4 | 25867113 | 26298097 | OsKitaake04g180900 |
| Inversion | Chr6 | 26079337 | 26874870 | |
| Inversion | Chr6 | 26821081 | 26967023 | OsKitaake06g241600 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 10105111 | Chr2 | 30562433 | |
| Translocation | Chr12 | 10106286 | Chr2 | 30562313 | |
| Translocation | Chr8 | 10509411 | Chr6 | 26964386 | 2 |
| Translocation | Chr8 | 10509418 | Chr6 | 26966859 | 2 |
| Translocation | Chr7 | 24169753 | Chr6 | 26821080 |