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| Mutant Information |
|---|
| Mutant Name | FN3919-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3919-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3230830 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g042200 |
| SBS | Chr2 | 19936494 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 34961455 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 12672932 | T-A | Homo | INTRON | |
| SBS | Chr3 | 13606413 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25619878 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26939003 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 28770341 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 261984 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 33022496 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 373179 | A-T | Hetero | STOP_GAINED | OsKitaake05g005400 |
| SBS | Chr5 | 20302456 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 527011 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11587136 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21537568 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1286154 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 25271376 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 2291773 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 809719 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8613205 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g092800 |
| SBS | Chr11 | 15939031 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 17855119 | C-G | Homo | INTRON | |
| SBS | Chr12 | 233736 | T-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 10503344 | 10503345 | 1 | OsKitaake02g124600 |
| Deletion | Chr4 | 11126001 | 11202000 | 75999 | 2 |
| Deletion | Chr7 | 11855643 | 11855644 | 1 | |
| Deletion | Chr5 | 13663860 | 13663864 | 4 | |
| Deletion | Chr9 | 14325787 | 14325805 | 18 | |
| Deletion | Chr4 | 15165801 | 15165812 | 11 | |
| Deletion | Chr3 | 15345885 | 15345905 | 20 | |
| Deletion | Chr4 | 16193556 | 16193562 | 6 | |
| Deletion | Chr3 | 17185636 | 17185637 | 1 | |
| Deletion | Chr6 | 19034001 | 19048000 | 13999 | 3 |
| Deletion | Chr11 | 20421729 | 20421730 | 1 | |
| Deletion | Chr12 | 23417939 | 23417940 | 1 | |
| Deletion | Chr2 | 28671661 | 28671667 | 6 | |
| Deletion | Chr3 | 32759999 | 32760011 | 12 | OsKitaake03g347900 |
| Deletion | Chr1 | 40867299 | 40867308 | 9 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 27984572 | 27984577 | 4 | |
| Insertion | Chr11 | 26206399 | 26206402 | 2 | |
| Insertion | Chr11 | 27947065 | 27947069 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 19025291 | 19034244 | OsKitaake06g171800 |