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Mutant Information

Mutant Name	FN3920-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3920-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30820945 C-A Hetero INTRON
SBS Chr1 38339540 A-G Hetero INTERGENIC
SBS Chr3 18721338 C-T Homo INTERGENIC
SBS Chr4 1467528 T-A Homo INTERGENIC
SBS Chr4 1467529 G-A Homo INTERGENIC
SBS Chr4 13685502 C-A Hetero INTERGENIC
SBS Chr4 25869587 C-A Hetero STOP_GAINED OsKitaake04g180900
SBS Chr5 29900595 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g286500
SBS Chr6 12056247 C-T Homo INTERGENIC
SBS Chr6 14604112 T-C Homo UTR_5_PRIME
SBS Chr6 15669136 C-T Homo INTRON
SBS Chr6 24339827 G-C Hetero INTERGENIC
SBS Chr7 2021195 A-G Hetero INTERGENIC
SBS Chr8 9914076 C-T Hetero INTERGENIC
SBS Chr8 15146996 G-A Hetero INTERGENIC
SBS Chr9 7300817 A-G Hetero INTERGENIC
SBS Chr11 7205030 T-A Hetero INTERGENIC
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr12 4480972 T-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2787106 2787117 11
Deletion Chr2 3881279 3881280 1
Deletion Chr4 4584141 4584148 7
Deletion Chr2 6348879 6348882 3
Deletion Chr12 7750128 7750145 17
Deletion Chr6 13439167 13439179 12
Deletion Chr2 20262469 20262470 1
Deletion Chr9 21619632 21619633 1
Deletion Chr5 25854199 25854201 2
Deletion Chr6 29333388 29333391 3
Deletion Chr4 33801881 33801886 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3730005 3730008 2
Insertion Chr7 21891172 21891175 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 14752385 Chr4 20473325 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30820945	C-A	Hetero	INTRON
SBS	Chr1	38339540	A-G	Hetero	INTERGENIC
SBS	Chr3	18721338	C-T	Homo	INTERGENIC
SBS	Chr4	1467528	T-A	Homo	INTERGENIC
SBS	Chr4	1467529	G-A	Homo	INTERGENIC
SBS	Chr4	13685502	C-A	Hetero	INTERGENIC
SBS	Chr4	25869587	C-A	Hetero	STOP_GAINED	OsKitaake04g180900
SBS	Chr5	29900595	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g286500
SBS	Chr6	12056247	C-T	Homo	INTERGENIC
SBS	Chr6	14604112	T-C	Homo	UTR_5_PRIME
SBS	Chr6	15669136	C-T	Homo	INTRON
SBS	Chr6	24339827	G-C	Hetero	INTERGENIC
SBS	Chr7	2021195	A-G	Hetero	INTERGENIC
SBS	Chr8	9914076	C-T	Hetero	INTERGENIC
SBS	Chr8	15146996	G-A	Hetero	INTERGENIC
SBS	Chr9	7300817	A-G	Hetero	INTERGENIC
SBS	Chr11	7205030	T-A	Hetero	INTERGENIC
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr12	4480972	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2787106	2787117	11
Deletion	Chr2	3881279	3881280	1
Deletion	Chr4	4584141	4584148	7
Deletion	Chr2	6348879	6348882	3
Deletion	Chr12	7750128	7750145	17
Deletion	Chr6	13439167	13439179	12
Deletion	Chr2	20262469	20262470	1
Deletion	Chr9	21619632	21619633	1
Deletion	Chr5	25854199	25854201	2
Deletion	Chr6	29333388	29333391	3
Deletion	Chr4	33801881	33801886	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	14752385	Chr4	20473325	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes