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| Mutant Information |
|---|
| Mutant Name | FN3921-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3921-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25020583 | T-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr1 | 38744107 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21115358 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35069515 | C-G | Hetero | INTRON | |
| SBS | Chr3 | 18150773 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 18528100 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 37679791 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g423400 |
| SBS | Chr4 | 13504479 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29271653 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29271654 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34433949 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18197502 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27934599 | T-A | Homo | INTRON | |
| SBS | Chr6 | 27950340 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 11439964 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18234610 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4577601 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5361950 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21853187 | G-A | Homo | INTRON | |
| SBS | Chr12 | 3019845 | G-T | Hetero | INTRON | |
| SBS | Chr12 | 3019850 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 4628470 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 20991158 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21357335 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24562364 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 2358001 | 2468000 | 109999 | 27 |
| Deletion | Chr4 | 4254001 | 4448000 | 193999 | 7 |
| Deletion | Chr4 | 4450001 | 4534000 | 83999 | |
| Deletion | Chr7 | 8242710 | 8242716 | 6 | |
| Deletion | Chr2 | 11594357 | 11594366 | 9 | |
| Deletion | Chr7 | 21395331 | 21395336 | 5 | |
| Deletion | Chr3 | 23427951 | 23427953 | 2 | |
| Deletion | Chr2 | 29200001 | 29214000 | 13999 | |
| Deletion | Chr3 | 29389490 | 29389512 | 22 | OsKitaake03g306600 |
| Deletion | Chr3 | 29603582 | 29603586 | 4 | |
| Deletion | Chr5 | 30165667 | 30165668 | 1 | |
| Deletion | Chr4 | 30917726 | 30917727 | 1 | |
| Deletion | Chr3 | 32489325 | 32489326 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 2606912 | 2606914 | 1 | OsKitaake05g029700  |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 370291 | Chr2 | 29200156 | |
| Translocation | Chr11 | 370598 | Chr2 | 29213968 | |
| Translocation | Chr4 | 2842412 | Chr2 | 15565950 |