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| Mutant Information |
|---|
| Mutant Name | FN3923-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3923-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 575841 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 3715365 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 23821657 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27863053 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g270600 |
| SBS | Chr1 | 28926420 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4296384 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 31126006 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 10285615 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 20316610 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28147618 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20970154 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 23132702 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13064550 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 24358661 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 24358664 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6772903 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10404372 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27211236 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 1616793 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 18327227 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6201671 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8529127 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20986629 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 9277955 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10207185 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12857605 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15910968 | G-T | Hetero | INTRON | |
| SBS | Chr12 | 4480561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18628128 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 24997877 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26826734 | C-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 557001 | 594000 | 36999 | 3 |
| Deletion | Chr7 | 1945195 | 1945196 | 1 | |
| Deletion | Chr2 | 8130708 | 8130709 | 1 | |
| Deletion | Chr3 | 11362945 | 11362951 | 6 | |
| Deletion | Chr12 | 23156829 | 23156832 | 3 | |
| Deletion | Chr11 | 23743507 | 23743509 | 2 | |
| Deletion | Chr6 | 24357646 | 24357653 | 7 | |
| Deletion | Chr3 | 27306001 | 27396000 | 89999 | 16 |
| Deletion | Chr5 | 29508694 | 29508696 | 2 | |
| Deletion | Chr4 | 30774136 | 30774138 | 2 | OsKitaake04g237700 |
| Deletion | Chr4 | 32015001 | 32078000 | 62999 | 5 |
| Deletion | Chr1 | 38285104 | 38285106 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27872045 | 27872048 | 2 | |
| Insertion | Chr12 | 19542545 | 19542549 | 3 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 5448612 | Chr8 | 17017540 | OsKitaake11g066800 |