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| Mutant Information |
|---|
| Mutant Name | FN3924-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3924-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5017635 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 8190121 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17153026 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 17422633 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7461188 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21729305 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31638116 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18055714 | G-A | Homo | INTRON | |
| SBS | Chr5 | 4761057 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7200191 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 8767424 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 2122706 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g026900 |
| SBS | Chr6 | 3079543 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18591211 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20517609 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2516287 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3320092 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 12249160 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14526325 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16600384 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20538991 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4133240 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 10708599 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19766526 | G-A | Homo | INTRON | |
| SBS | Chr8 | 24990923 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 27587069 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8482406 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12007671 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18212703 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12359042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14594297 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20525928 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 3880360 | 3880367 | 7 | OsKitaake07g049800 |
| Deletion | Chr8 | 4010212 | 4010213 | 1 | |
| Deletion | Chr10 | 4379263 | 4379268 | 5 | |
| Deletion | Chr7 | 4819396 | 4819397 | 1 | OsKitaake07g059200 |
| Deletion | Chr6 | 8373486 | 8373487 | 1 | |
| Deletion | Chr10 | 9161037 | 9161050 | 13 | |
| Deletion | Chr5 | 9861919 | 9861924 | 5 | |
| Deletion | Chr5 | 13478831 | 13478836 | 5 | |
| Deletion | Chr5 | 14931004 | 14931007 | 3 | |
| Deletion | Chr8 | 20375878 | 20375885 | 7 | |
| Deletion | Chr12 | 21259174 | 21259183 | 9 | |
| Deletion | Chr5 | 22748129 | 22748137 | 8 | |
| Deletion | Chr12 | 24530001 | 24592000 | 61999 | 10 |
| Deletion | Chr5 | 29963748 | 29963749 | 1 | |
| Deletion | Chr3 | 36794854 | 36794864 | 10 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 14260248 | 14260251 | 2 | |
| Insertion | Chr8 | 15843248 | 15843251 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 9511244 | 10213112 | |
| Inversion | Chr7 | 9511249 | 10213109 | |
| Inversion | Chr5 | 24473800 | 24672863 | OsKitaake05g198400 |
| Inversion | Chr5 | 24473809 | 24672873 | OsKitaake05g198400 |