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Mutant Information

Mutant Name	FN3925-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3925-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22364602 G-A Hetero INTERGENIC
SBS Chr1 34915605 A-C Homo INTERGENIC
SBS Chr1 40484053 C-G Hetero INTERGENIC
SBS Chr2 718591 A-G Homo INTRON
SBS Chr2 1649244 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g025800
SBS Chr2 16996633 C-T Hetero INTERGENIC
SBS Chr3 12686803 C-A Hetero INTERGENIC
SBS Chr3 15108132 C-T Hetero INTERGENIC
SBS Chr3 21677219 A-T Hetero INTRON
SBS Chr3 33637249 T-A Hetero INTERGENIC
SBS Chr4 7682060 C-T Hetero INTERGENIC
SBS Chr4 10832923 A-C Hetero INTERGENIC
SBS Chr4 18064916 C-T Hetero INTERGENIC
SBS Chr4 18837400 T-A Hetero INTRON
SBS Chr5 20881578 G-A Hetero INTERGENIC
SBS Chr5 23259585 C-T Hetero UTR_3_PRIME
SBS Chr5 24743635 C-A Hetero INTERGENIC
SBS Chr6 3208326 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g044900
SBS Chr7 1347735 C-T Hetero INTRON
SBS Chr7 17177538 T-C Hetero INTERGENIC
SBS Chr7 25907022 G-A Hetero INTERGENIC
SBS Chr8 8608270 G-A Hetero INTERGENIC
SBS Chr8 8608271 T-A Hetero INTERGENIC
SBS Chr10 2721063 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g022300
SBS Chr10 21329907 C-A Homo INTERGENIC
SBS Chr12 4573047 G-T Hetero INTERGENIC
SBS Chr12 7747164 G-A Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1049504 1049505 1
Deletion Chr1 2590082 2590088 6
Deletion Chr6 3208676 3208678 2 OsKitaake06g044900
Deletion Chr2 4850825 4850829 4
Deletion Chr2 5294021 5294024 3
Deletion Chr9 5443018 5443020 2
Deletion Chr5 6679078 6679079 1
Deletion Chr12 6879219 6879223 4
Deletion Chr12 7494971 7494972 1
Deletion Chr2 7800978 7800988 10
Deletion Chr8 8202816 8202819 3
Deletion Chr5 11240499 11240505 6
Deletion Chr8 15167183 15167186 3
Deletion Chr5 18176368 18176369 1
Deletion Chr1 20322426 20322440 14
Deletion Chr3 20409949 20409960 11
Deletion Chr4 20642035 20642040 5
Deletion Chr3 22530076 22530091 15
Deletion Chr8 23106876 23106881 5
Deletion Chr5 23644582 23644587 5 OsKitaake05g206800
Deletion Chr7 23760328 23760337 9
Deletion Chr11 24769842 24769844 2
Deletion Chr5 25836189 25836191 2 OsKitaake05g227600
Deletion Chr2 26094773 26094783 10 OsKitaake02g258100
Deletion Chr8 28495716 28495718 2
Deletion Chr3 29584050 29584052 2
Deletion Chr4 30207708 30207718 10
Deletion Chr1 39982555 39982558 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24393479 24393482 2
Insertion Chr5 25230394 25230401 6
Insertion Chr7 20549570 20549573 2
Insertion Chr8 4847970 4847973 2
Insertion Chr11 6420656 6420659 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2738451 Chr4 6136664 2
Translocation Chr12 2738725 Chr4 6136661 2
Translocation Chr12 18618660 Chr4 6137568 OsKitaake04g030600
Translocation Chr12 18619104 Chr4 6136661 OsKitaake04g030600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22364602	G-A	Hetero	INTERGENIC
SBS	Chr1	34915605	A-C	Homo	INTERGENIC
SBS	Chr1	40484053	C-G	Hetero	INTERGENIC
SBS	Chr2	718591	A-G	Homo	INTRON
SBS	Chr2	1649244	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g025800
SBS	Chr2	16996633	C-T	Hetero	INTERGENIC
SBS	Chr3	12686803	C-A	Hetero	INTERGENIC
SBS	Chr3	15108132	C-T	Hetero	INTERGENIC
SBS	Chr3	21677219	A-T	Hetero	INTRON
SBS	Chr3	33637249	T-A	Hetero	INTERGENIC
SBS	Chr4	7682060	C-T	Hetero	INTERGENIC
SBS	Chr4	10832923	A-C	Hetero	INTERGENIC
SBS	Chr4	18064916	C-T	Hetero	INTERGENIC
SBS	Chr4	18837400	T-A	Hetero	INTRON
SBS	Chr5	20881578	G-A	Hetero	INTERGENIC
SBS	Chr5	23259585	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	24743635	C-A	Hetero	INTERGENIC
SBS	Chr6	3208326	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g044900
SBS	Chr7	1347735	C-T	Hetero	INTRON
SBS	Chr7	17177538	T-C	Hetero	INTERGENIC
SBS	Chr7	25907022	G-A	Hetero	INTERGENIC
SBS	Chr8	8608270	G-A	Hetero	INTERGENIC
SBS	Chr8	8608271	T-A	Hetero	INTERGENIC
SBS	Chr10	2721063	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g022300
SBS	Chr10	21329907	C-A	Homo	INTERGENIC
SBS	Chr12	4573047	G-T	Hetero	INTERGENIC
SBS	Chr12	7747164	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1049504	1049505	1
Deletion	Chr1	2590082	2590088	6
Deletion	Chr6	3208676	3208678	2	OsKitaake06g044900
Deletion	Chr2	4850825	4850829	4
Deletion	Chr2	5294021	5294024	3
Deletion	Chr9	5443018	5443020	2
Deletion	Chr5	6679078	6679079	1
Deletion	Chr12	6879219	6879223	4
Deletion	Chr12	7494971	7494972	1
Deletion	Chr2	7800978	7800988	10
Deletion	Chr8	8202816	8202819	3
Deletion	Chr5	11240499	11240505	6
Deletion	Chr8	15167183	15167186	3
Deletion	Chr5	18176368	18176369	1
Deletion	Chr1	20322426	20322440	14
Deletion	Chr3	20409949	20409960	11
Deletion	Chr4	20642035	20642040	5
Deletion	Chr3	22530076	22530091	15
Deletion	Chr8	23106876	23106881	5
Deletion	Chr5	23644582	23644587	5	OsKitaake05g206800
Deletion	Chr7	23760328	23760337	9
Deletion	Chr11	24769842	24769844	2
Deletion	Chr5	25836189	25836191	2	OsKitaake05g227600
Deletion	Chr2	26094773	26094783	10	OsKitaake02g258100
Deletion	Chr8	28495716	28495718	2
Deletion	Chr3	29584050	29584052	2
Deletion	Chr4	30207708	30207718	10
Deletion	Chr1	39982555	39982558	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2738451	Chr4	6136664	2
Translocation	Chr12	2738725	Chr4	6136661	2
Translocation	Chr12	18618660	Chr4	6137568	OsKitaake04g030600
Translocation	Chr12	18619104	Chr4	6136661	OsKitaake04g030600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes